Analysis of interatomic Contacts of Structural Units in PDB entry:
1YD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YD8 entry

There are 4 chains in PDB entry 1YD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
U
 MET 1LEU 73
G
 GLY -1GLY 299
V
 MET 1LEU 73
H
 GLY -1GLY 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1YD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
U
22 35Right-handed alpha
Helix 2
2
U
37 39Right-handed 310
Helix 3
3
G
211 234Right-handed alpha
Helix 4
4
G
241 267Right-handed alpha
Helix 5
5
G
274 299Right-handed alpha
Helix 6
6
V
22 35Right-handed alpha
Helix 7
7
V
37 39Right-handed 310
Helix 8
8
H
211 234Right-handed alpha
Helix 9
9
H
241 267Right-handed alpha
Helix 10
10
H
274 299Right-handed alpha
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There are 2 sheets in PDB entry 1YD8. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
12 16first strand
Strand 2
U
2 7anti-parallel
Strand 3
U
66 71parallel
Strand 4
U
41 44anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
12 16first strand
Strand 2
V
2 7anti-parallel
Strand 3
V
66 71parallel
Strand 4
V
41 44anti-parallel
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