Analysis of interatomic Contacts of Structural Units in PDB entry:
1YDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YDH entry

There are 2 chains in PDB entry 1YDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5THR 188
B
 ARG 8THR 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1YDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 40Right-handed alpha
Helix 2
2
A
51 64Right-handed alpha
Helix 3
3
A
76 81Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
115 131Right-handed alpha
Helix 6
6
A
143 146Right-handed 310
Helix 7
7
A
147 160Right-handed alpha
Helix 8
8
A
164 169Right-handed alpha
Helix 9
9
A
176 187Right-handed alpha
Helix 10
10
B
24 40Right-handed alpha
Helix 11
11
B
51 64Right-handed alpha
Helix 12
12
B
76 81Right-handed alpha
Helix 13
13
B
94 106Right-handed alpha
Helix 14
14
B
115 131Right-handed alpha
Helix 15
15
B
143 146Right-handed 310
Helix 16
16
B
147 160Right-handed alpha
Helix 17
17
B
164 169Right-handed alpha
Helix 18
18
B
176 187Right-handed alpha
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There are 2 sheets in PDB entry 1YDH. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
68 73parallel
Strand 3
A
43 46parallel
Strand 4
A
11 15parallel
Strand 5
A
108 111parallel
Strand 6
A
137 141parallel
Strand 7
A
171 174parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 92first strand
Strand 2
B
68 73parallel
Strand 3
B
43 46parallel
Strand 4
B
11 15parallel
Strand 5
B
108 111parallel
Strand 6
B
137 141parallel
Strand 7
B
171 174parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il