Analysis of interatomic Contacts of Structural Units in PDB entry:
1YE9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1YE9 entry

There are 16 chains in PDB entry 1YE9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 75	ALA 297
E	LYS 309	ILE 564
B	SER 75	ALA 297
F	LYS 309	ILE 564
C	SER 75	ALA 297
G	LYS 309	ILE 564
D	SER 75	ALA 297
H	LYS 309	ILE 564
I	SER 75	ALA 297
M	LYS 309	ILE 564
J	SER 75	ALA 297
N	LYS 309	ILE 564
K	SER 75	ALA 297
O	LYS 309	ILE 564
L	SER 75	ALA 297
P	LYS 309	ILE 564

There are154 helices in PDB entry 1YE9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	107	119	Right-handed alpha
Helix 2	2	A	150	154	Right-handed 310
Helix 3	3	A	210	212	Right-handed 310
Helix 4	4	A	213	222	Right-handed alpha
Helix 5	5	A	236	245	Right-handed alpha
Helix 6	6	A	246	248	Right-handed 310
Helix 7	7	A	249	258	Right-handed alpha
Helix 8	8	A	259	262	Right-handed 310
Helix 9	9	A	265	269	Right-handed 310
Helix 10	10	E	309	314	Right-handed alpha
Helix 11	11	E	316	329	Right-handed alpha
Helix 12	12	E	344	346	Right-handed 310
Helix 13	13	E	381	386	Right-handed alpha
Helix 14	14	E	405	418	Right-handed alpha
Helix 15	15	E	418	423	Right-handed alpha
Helix 16	16	E	427	435	Right-handed 310
Helix 17	17	E	498	502	Right-handed 310
Helix 18	18	E	505	513	Right-handed alpha
Helix 19	19	E	516	533	Right-handed alpha
Helix 20	20	E	536	549	Right-handed alpha
Helix 21	21	E	551	563	Right-handed alpha
Helix 22	22	B	107	119	Right-handed alpha
Helix 23	23	B	150	154	Right-handed 310
Helix 24	24	B	210	212	Right-handed 310
Helix 25	25	B	213	222	Right-handed alpha
Helix 26	26	B	236	246	Right-handed alpha
Helix 27	27	B	249	258	Right-handed alpha
Helix 28	28	B	259	262	Right-handed 310
Helix 29	29	B	265	269	Right-handed 310
Helix 30	30	F	309	314	Right-handed alpha
Helix 31	31	F	316	329	Right-handed alpha
Helix 32	32	F	344	346	Right-handed 310
Helix 33	33	F	381	386	Right-handed alpha
Helix 34	34	F	405	423	Right-handed alpha
Helix 35	35	F	427	435	Right-handed 310
Helix 36	36	F	498	502	Right-handed 310
Helix 37	37	F	505	513	Right-handed alpha
Helix 38	38	F	516	533	Right-handed alpha
Helix 39	39	F	536	549	Right-handed alpha
Helix 40	40	F	551	563	Right-handed alpha
Helix 41	41	C	107	119	Right-handed alpha
Helix 42	42	C	150	154	Right-handed 310
Helix 43	43	C	210	212	Right-handed 310
Helix 44	44	C	213	222	Right-handed alpha
Helix 45	45	C	236	246	Right-handed alpha
Helix 46	46	C	249	258	Right-handed alpha
Helix 47	47	C	259	262	Right-handed 310
Helix 48	48	C	265	269	Right-handed 310
Helix 49	49	G	309	314	Right-handed alpha
Helix 50	50	G	316	329	Right-handed alpha
Helix 51	51	G	344	348	Right-handed 310
Helix 52	52	G	381	386	Right-handed alpha
Helix 53	53	G	405	418	Right-handed alpha
Helix 54	54	G	418	423	Right-handed alpha
Helix 55	55	G	427	435	Right-handed 310
Helix 56	56	G	498	502	Right-handed 310
Helix 57	57	G	505	514	Right-handed alpha
Helix 58	58	G	516	533	Right-handed alpha
Helix 59	59	G	536	549	Right-handed alpha
Helix 60	60	G	551	563	Right-handed alpha
Helix 61	61	D	107	119	Right-handed alpha
Helix 62	62	D	150	154	Right-handed 310
Helix 63	63	D	210	212	Right-handed 310
Helix 64	64	D	213	222	Right-handed alpha
Helix 65	65	D	236	246	Right-handed alpha
Helix 66	66	D	249	258	Right-handed alpha
Helix 67	67	D	259	262	Right-handed 310
Helix 68	68	D	265	269	Right-handed 310
Helix 69	69	H	309	314	Right-handed alpha
Helix 70	70	H	316	329	Right-handed alpha
Helix 71	71	H	344	346	Right-handed 310
Helix 72	72	H	381	386	Right-handed alpha
Helix 73	73	H	405	418	Right-handed alpha
Helix 74	74	H	418	423	Right-handed alpha
Helix 75	75	H	427	431	Right-handed 310
Helix 76	76	H	498	502	Right-handed 310
Helix 77	77	H	505	514	Right-handed alpha
Helix 78	78	H	516	533	Right-handed alpha
Helix 79	79	H	536	549	Right-handed alpha
Helix 80	80	H	551	563	Right-handed alpha
Helix 81	81	I	107	119	Right-handed alpha
Helix 82	82	I	150	154	Right-handed 310
Helix 83	83	I	210	212	Right-handed 310
Helix 84	84	I	213	222	Right-handed alpha
Helix 85	85	I	236	246	Right-handed alpha
Helix 86	86	I	249	258	Right-handed alpha
Helix 87	87	M	309	314	Right-handed alpha
Helix 88	88	M	316	329	Right-handed alpha
Helix 89	89	M	344	346	Right-handed 310
Helix 90	90	M	381	386	Right-handed alpha
Helix 91	91	M	405	423	Right-handed alpha
Helix 92	92	M	427	435	Right-handed 310
Helix 93	93	M	498	502	Right-handed 310
Helix 94	94	M	505	514	Right-handed alpha
Helix 95	95	M	516	533	Right-handed alpha
Helix 96	96	M	536	549	Right-handed alpha
Helix 97	97	M	551	563	Right-handed alpha
Helix 98	98	J	107	119	Right-handed alpha
Helix 99	99	J	150	154	Right-handed 310
Helix 100	100	J	210	212	Right-handed 310
Helix 101	101	J	213	222	Right-handed alpha
Helix 102	102	J	236	245	Right-handed alpha
Helix 103	103	J	246	248	Right-handed 310
Helix 104	104	J	249	258	Right-handed alpha
Helix 105	105	J	259	262	Right-handed 310
Helix 106	106	J	265	269	Right-handed 310
Helix 107	107	N	309	314	Right-handed alpha
Helix 108	108	N	316	329	Right-handed alpha
Helix 109	109	N	344	348	Right-handed 310
Helix 110	110	N	381	386	Right-handed alpha
Helix 111	111	N	405	423	Right-handed alpha
Helix 112	112	N	427	435	Right-handed 310
Helix 113	113	N	498	502	Right-handed 310
Helix 114	114	N	505	514	Right-handed alpha
Helix 115	115	N	516	534	Right-handed alpha
Helix 116	116	N	536	549	Right-handed alpha
Helix 117	117	N	551	563	Right-handed alpha
Helix 118	118	K	107	119	Right-handed alpha
Helix 119	119	K	150	154	Right-handed 310
Helix 120	120	K	210	212	Right-handed 310
Helix 121	121	K	213	222	Right-handed alpha
Helix 122	122	K	236	246	Right-handed alpha
Helix 123	123	K	249	258	Right-handed alpha
Helix 124	124	K	259	262	Right-handed 310
Helix 125	125	O	309	314	Right-handed alpha
Helix 126	126	O	316	329	Right-handed alpha
Helix 127	127	O	344	348	Right-handed 310
Helix 128	128	O	381	386	Right-handed alpha
Helix 129	129	O	405	418	Right-handed alpha
Helix 130	130	O	418	423	Right-handed alpha
Helix 131	131	O	427	435	Right-handed 310
Helix 132	132	O	498	502	Right-handed 310
Helix 133	133	O	505	514	Right-handed alpha
Helix 134	134	O	516	533	Right-handed alpha
Helix 135	135	O	536	549	Right-handed alpha
Helix 136	136	O	551	563	Right-handed alpha
Helix 137	137	L	107	119	Right-handed alpha
Helix 138	138	L	150	154	Right-handed 310
Helix 139	139	L	210	212	Right-handed 310
Helix 140	140	L	213	222	Right-handed alpha
Helix 141	141	L	236	246	Right-handed alpha
Helix 142	142	L	249	258	Right-handed alpha
Helix 143	143	L	265	269	Right-handed 310
Helix 144	144	P	309	314	Right-handed alpha
Helix 145	145	P	316	329	Right-handed alpha
Helix 146	146	P	344	346	Right-handed 310
Helix 147	147	P	381	386	Right-handed alpha
Helix 148	148	P	405	423	Right-handed alpha
Helix 149	149	P	427	435	Right-handed 310
Helix 150	150	P	498	502	Right-handed 310
Helix 151	151	P	505	514	Right-handed alpha
Helix 152	152	P	516	533	Right-handed alpha
Helix 153	153	P	536	549	Right-handed alpha
Helix 154	154	P	551	563	Right-handed alpha

There are 12 sheets in PDB entry 1YE9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	H	488	494	anti-parallel
Strand 3	G	488	495	anti-parallel
Strand 4	B	95	97	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	401	first strand
Strand 2	A	271	280	anti-parallel
Strand 3	A	286	295	anti-parallel
Strand 4	E	333	342	anti-parallel
Strand 5	E	367	377	anti-parallel
Strand 6	A	131	140	anti-parallel
Strand 7	A	160	167	anti-parallel
Strand 8	A	184	191	anti-parallel
Strand 9	A	194	201	anti-parallel
Strand 10	A	271	280	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	F	488	495	anti-parallel
Strand 3	E	488	494	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	400	401	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	286	295	anti-parallel
Strand 4	F	333	342	anti-parallel
Strand 5	F	368	377	anti-parallel
Strand 6	B	131	140	anti-parallel
Strand 7	B	160	168	anti-parallel
Strand 8	B	183	191	anti-parallel
Strand 9	B	194	201	anti-parallel
Strand 10	B	271	272	anti-parallel
Strand 11	B	286	295	anti-parallel

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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	400	401	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	286	295	anti-parallel
Strand 4	G	333	342	anti-parallel
Strand 5	G	367	377	anti-parallel
Strand 6	C	131	140	anti-parallel
Strand 7	C	160	168	anti-parallel
Strand 8	C	183	191	anti-parallel
Strand 9	C	194	201	anti-parallel
Strand 10	C	271	272	anti-parallel
Strand 11	C	286	295	anti-parallel

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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	400	401	first strand
Strand 2	D	277	280	anti-parallel
Strand 3	D	286	295	anti-parallel
Strand 4	H	333	342	anti-parallel
Strand 5	H	367	377	anti-parallel
Strand 6	D	131	140	anti-parallel
Strand 7	D	160	167	anti-parallel
Strand 8	D	184	191	anti-parallel
Strand 9	D	194	201	anti-parallel
Strand 10	D	271	272	anti-parallel
Strand 11	D	286	295	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	96	97	first strand
Strand 2	P	488	494	anti-parallel
Strand 3	O	488	494	anti-parallel
Strand 4	J	96	97	anti-parallel

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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	400	401	first strand
Strand 2	I	277	280	anti-parallel
Strand 3	I	286	295	anti-parallel
Strand 4	M	333	342	anti-parallel
Strand 5	M	367	377	anti-parallel
Strand 6	I	131	140	anti-parallel
Strand 7	I	160	167	anti-parallel
Strand 8	I	184	191	anti-parallel
Strand 9	I	194	201	anti-parallel
Strand 10	I	271	272	anti-parallel
Strand 11	I	286	295	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	96	97	first strand
Strand 2	N	488	494	anti-parallel
Strand 3	M	488	495	anti-parallel
Strand 4	L	95	97	anti-parallel

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There are 11 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	400	401	first strand
Strand 2	J	277	280	anti-parallel
Strand 3	J	286	295	anti-parallel
Strand 4	N	333	342	anti-parallel
Strand 5	N	367	377	anti-parallel
Strand 6	J	131	140	anti-parallel
Strand 7	J	160	168	anti-parallel
Strand 8	J	183	191	anti-parallel
Strand 9	J	194	201	anti-parallel
Strand 10	J	271	272	anti-parallel
Strand 11	J	286	295	anti-parallel

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There are 11 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	400	401	first strand
Strand 2	K	277	281	anti-parallel
Strand 3	K	285	295	anti-parallel
Strand 4	O	333	342	anti-parallel
Strand 5	O	367	377	anti-parallel
Strand 6	K	131	140	anti-parallel
Strand 7	K	160	167	anti-parallel
Strand 8	K	184	191	anti-parallel
Strand 9	K	194	201	anti-parallel
Strand 10	K	271	272	anti-parallel
Strand 11	K	285	295	anti-parallel

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There are 11 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	400	401	first strand
Strand 2	L	277	280	anti-parallel
Strand 3	L	286	295	anti-parallel
Strand 4	P	333	342	anti-parallel
Strand 5	P	368	377	anti-parallel
Strand 6	L	131	140	anti-parallel
Strand 7	L	160	167	anti-parallel
Strand 8	L	184	191	anti-parallel
Strand 9	L	194	201	anti-parallel
Strand 10	L	271	272	anti-parallel
Strand 11	L	286	295	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1YE9

Analysis of interatomic Contacts of Structural Units in PDB entry:
1YE9