Analysis of interatomic Contacts of Structural Units in PDB entry:
1YEW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YEW entry

There are 9 chains in PDB entry 1YEW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 33MET 414
B
 ALA 7LEU 244
C
 LEU 45MET 259
E
 HIS 33MET 414
F
 ALA 7LEU 244
G
 LEU 45MET 259
I
 HIS 33MET 414
J
 ALA 7LEU 244
K
 LEU 45MET 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 1YEW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 45Right-handed alpha
Helix 2
2
A
162 166Right-handed 310
Helix 3
3
A
184 208Right-handed alpha
Helix 4
4
A
212 221Right-handed alpha
Helix 5
5
A
231 257Right-handed alpha
Helix 6
6
A
337 339Right-handed 310
Helix 7
7
A
368 374Right-handed alpha
Helix 8
8
A
375 382Right-handed 310
Helix 9
9
B
10 44Right-handed alpha
Helix 10
10
B
51 55Right-handed 310
Helix 11
11
B
58 69Right-handed alpha
Helix 12
12
B
69 84Right-handed alpha
Helix 13
13
B
87 107Right-handed alpha
Helix 14
14
B
115 120Right-handed alpha
Helix 15
15
B
124 137Right-handed alpha
Helix 16
16
B
140 165Right-handed alpha
Helix 17
17
B
166 168Right-handed 310
Helix 18
18
B
180 188Right-handed alpha
Helix 19
19
B
233 243Right-handed alpha
Helix 20
20
C
50 74Right-handed alpha
Helix 21
21
C
82 89Right-handed alpha
Helix 22
22
C
89 114Right-handed alpha
Helix 23
23
C
125 150Right-handed alpha
Helix 24
24
C
150 163Right-handed alpha
Helix 25
25
C
170 177Right-handed alpha
Helix 26
26
C
179 199Right-handed alpha
Helix 27
27
C
233 238Right-handed alpha
Helix 28
28
C
246 251Right-handed alpha
Helix 29
29
C
254 258Right-handed 310
Helix 30
30
E
39 45Right-handed alpha
Helix 31
31
E
83 85Right-handed 310
Helix 32
32
E
162 166Right-handed 310
Helix 33
33
E
184 208Right-handed alpha
Helix 34
34
E
212 221Right-handed alpha
Helix 35
35
E
231 257Right-handed alpha
Helix 36
36
E
337 339Right-handed 310
Helix 37
37
E
368 374Right-handed alpha
Helix 38
38
E
375 382Right-handed 310
Helix 39
39
F
10 44Right-handed alpha
Helix 40
40
F
51 55Right-handed 310
Helix 41
41
F
58 69Right-handed alpha
Helix 42
42
F
69 84Right-handed alpha
Helix 43
43
F
87 107Right-handed alpha
Helix 44
44
F
115 120Right-handed alpha
Helix 45
45
F
124 137Right-handed alpha
Helix 46
46
F
140 165Right-handed alpha
Helix 47
47
F
166 168Right-handed 310
Helix 48
48
F
180 188Right-handed alpha
Helix 49
49
F
233 242Right-handed alpha
Helix 50
50
G
50 74Right-handed alpha
Helix 51
51
G
82 89Right-handed alpha
Helix 52
52
G
89 114Right-handed alpha
Helix 53
53
G
125 150Right-handed alpha
Helix 54
54
G
150 163Right-handed alpha
Helix 55
55
G
170 177Right-handed alpha
Helix 56
56
G
179 199Right-handed alpha
Helix 57
57
G
233 238Right-handed alpha
Helix 58
58
G
246 251Right-handed alpha
Helix 59
59
G
254 258Right-handed 310
Helix 60
60
I
39 45Right-handed alpha
Helix 61
61
I
83 85Right-handed 310
Helix 62
62
I
162 166Right-handed 310
Helix 63
63
I
184 208Right-handed alpha
Helix 64
64
I
212 221Right-handed alpha
Helix 65
65
I
231 257Right-handed alpha
Helix 66
66
I
337 339Right-handed 310
Helix 67
67
I
368 374Right-handed alpha
Helix 68
68
I
375 382Right-handed 310
Helix 69
69
J
10 44Right-handed alpha
Helix 70
70
J
51 55Right-handed 310
Helix 71
71
J
58 69Right-handed alpha
Helix 72
72
J
69 84Right-handed alpha
Helix 73
73
J
87 107Right-handed alpha
Helix 74
74
J
115 120Right-handed alpha
Helix 75
75
J
124 137Right-handed alpha
Helix 76
76
J
140 165Right-handed alpha
Helix 77
77
J
166 168Right-handed 310
Helix 78
78
J
180 188Right-handed alpha
Helix 79
79
J
233 243Right-handed alpha
Helix 80
80
K
50 74Right-handed alpha
Helix 81
81
K
82 89Right-handed alpha
Helix 82
82
K
89 114Right-handed alpha
Helix 83
83
K
125 150Right-handed alpha
Helix 84
84
K
150 163Right-handed alpha
Helix 85
85
K
170 177Right-handed alpha
Helix 86
86
K
179 199Right-handed alpha
Helix 87
87
K
233 238Right-handed alpha
Helix 88
88
K
246 251Right-handed alpha
Helix 89
89
K
252 258Right-handed 310
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There are 19 sheets in PDB entry 1YEW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 54first strand
Strand 2
A
64 73anti-parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
98 105anti-parallel
Strand 5
A
108 109anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
154 160parallel
Strand 3
A
134 144anti-parallel
Strand 4
A
87 92anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
177 179anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
359 367anti-parallel
Strand 3
A
297 306anti-parallel
Strand 4
A
282 292anti-parallel
Strand 5
A
410 412parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
323 325parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
386 395anti-parallel
Strand 5
A
400 408anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
176 179anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 54first strand
Strand 2
E
64 73anti-parallel
Strand 3
E
121 130anti-parallel
Strand 4
E
98 105anti-parallel
Strand 5
E
108 109anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
154 160parallel
Strand 3
E
134 144anti-parallel
Strand 4
E
87 92anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 171first strand
Strand 2
E
177 179anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
346 348first strand
Strand 2
E
359 367anti-parallel
Strand 3
E
297 306anti-parallel
Strand 4
E
282 292anti-parallel
Strand 5
E
410 412parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
341 342first strand
Strand 2
E
323 325parallel
Strand 3
E
312 318anti-parallel
Strand 4
E
386 395anti-parallel
Strand 5
E
400 408anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
170 173first strand
Strand 2
F
176 179anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
47 54first strand
Strand 2
I
64 73anti-parallel
Strand 3
I
121 130anti-parallel
Strand 4
I
98 105anti-parallel
Strand 5
I
108 109anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
58 60first strand
Strand 2
I
154 160parallel
Strand 3
I
134 139anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
87 89first strand
Strand 2
I
142 144anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
169 171first strand
Strand 2
I
177 179anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
346 348first strand
Strand 2
I
359 367anti-parallel
Strand 3
I
297 306anti-parallel
Strand 4
I
282 292anti-parallel
Strand 5
I
410 412parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
341 342first strand
Strand 2
I
323 325parallel
Strand 3
I
312 318anti-parallel
Strand 4
I
386 395anti-parallel
Strand 5
I
400 408anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
170 173first strand
Strand 2
J
176 179anti-parallel
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