Analysis of interatomic Contacts of Structural Units in PDB entry:
1YF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YF8 entry

There are 2 chains in PDB entry 1YF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1CYS 240
B
 CYS 1PRO 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1YF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
109 118Right-handed alpha
Helix 3
3
A
119 123Right-handed 310
Helix 4
4
A
126 139Right-handed alpha
Helix 5
5
A
143 157Right-handed alpha
Helix 6
6
A
157 163Right-handed alpha
Helix 7
7
A
163 177Right-handed alpha
Helix 8
8
A
183 203Right-handed alpha
Helix 9
9
A
226 230Right-handed alpha
Helix 10
10
B
22 24Right-handed 310
Helix 11
11
B
41 45Right-handed 310
Helix 12
12
B
81 86Right-handed 310
Helix 13
13
B
123 126Right-handed 310
Helix 14
14
B
164 166Right-handed 310
Helix 15
15
B
206 209Right-handed 310
Helix 16
16
B
246 249Right-handed 310
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There are 11 sheets in PDB entry 1YF8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
52 58parallel
Strand 3
A
64 70anti-parallel
Strand 4
A
76 80anti-parallel
Strand 5
A
85 87anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
37 40anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 213first strand
Strand 2
A
222 225anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
46 48anti-parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
59 63anti-parallel
Strand 5
B
72 75anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
16 20anti-parallel
Strand 3
B
10 12anti-parallel
Strand 4
B
128 130anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
95 97anti-parallel
Strand 3
B
102 105anti-parallel
Strand 4
B
116 118anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
147 152anti-parallel
Strand 3
B
137 143anti-parallel
Strand 4
B
168 171anti-parallel
Strand 5
B
177 179anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
147 152anti-parallel
Strand 3
B
137 143anti-parallel
Strand 4
B
251 254anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 188first strand
Strand 2
B
198 201anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
219 221anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
238 241anti-parallel
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