Analysis of interatomic Contacts of Structural Units in PDB entry:
1YFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YFJ entry

There are 16 chains in PDB entry 1YFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 T 101 G 115
2
 T 201 G 215
3
 T 301 G 315
4
 T 401 G 415
5
 C 502 G 515
6
 T 601 G 615
7
 T 701 G 715
8
 T 801 G 815
9
 T 901 G 915
0
 T 1001 G 1015
A
 MET 1ASN 259
B
 MET 1ASN 259
C
 MET 1ASN 259
D
 MET 1ASN 259
E
 MET 1ASN 259
F
 MET 1ASN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 1YFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
38 42Right-handed 310
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
66 77Right-handed alpha
Helix 5
5
A
83 98Right-handed alpha
Helix 6
6
A
99 110Right-handed alpha
Helix 7
7
A
111 114Right-handed 310
Helix 8
8
A
133 147Right-handed alpha
Helix 9
9
A
156 160Right-handed 310
Helix 10
10
A
179 185Right-handed 310
Helix 11
11
A
186 203Right-handed alpha
Helix 12
12
A
220 228Right-handed alpha
Helix 13
13
A
236 245Right-handed alpha
Helix 14
14
B
14 20Right-handed alpha
Helix 15
15
B
38 42Right-handed 310
Helix 16
16
B
52 63Right-handed alpha
Helix 17
17
B
66 77Right-handed alpha
Helix 18
18
B
83 98Right-handed alpha
Helix 19
19
B
99 108Right-handed alpha
Helix 20
20
B
110 114Right-handed 310
Helix 21
21
B
133 147Right-handed alpha
Helix 22
22
B
156 160Right-handed 310
Helix 23
23
B
179 185Right-handed 310
Helix 24
24
B
186 203Right-handed alpha
Helix 25
25
B
220 228Right-handed alpha
Helix 26
26
B
236 244Right-handed alpha
Helix 27
27
C
14 22Right-handed alpha
Helix 28
28
C
38 42Right-handed 310
Helix 29
29
C
52 63Right-handed alpha
Helix 30
30
C
66 78Right-handed alpha
Helix 31
31
C
83 98Right-handed alpha
Helix 32
32
C
99 108Right-handed alpha
Helix 33
33
C
109 114Right-handed 310
Helix 34
34
C
133 145Right-handed alpha
Helix 35
35
C
156 160Right-handed 310
Helix 36
36
C
179 185Right-handed 310
Helix 37
37
C
186 203Right-handed alpha
Helix 38
38
C
220 228Right-handed alpha
Helix 39
39
C
236 244Right-handed alpha
Helix 40
40
D
14 20Right-handed alpha
Helix 41
41
D
38 42Right-handed 310
Helix 42
42
D
52 63Right-handed alpha
Helix 43
43
D
66 78Right-handed alpha
Helix 44
44
D
83 98Right-handed alpha
Helix 45
45
D
99 110Right-handed alpha
Helix 46
46
D
111 114Right-handed 310
Helix 47
47
D
135 145Right-handed alpha
Helix 48
48
D
156 160Right-handed 310
Helix 49
49
D
179 185Right-handed 310
Helix 50
50
D
186 203Right-handed alpha
Helix 51
51
D
220 228Right-handed alpha
Helix 52
52
D
236 242Right-handed alpha
Helix 53
53
E
14 19Right-handed alpha
Helix 54
54
E
20 22Right-handed 310
Helix 55
55
E
38 42Right-handed 310
Helix 56
56
E
52 63Right-handed alpha
Helix 57
57
E
66 77Right-handed alpha
Helix 58
58
E
83 98Right-handed alpha
Helix 59
59
E
99 109Right-handed alpha
Helix 60
60
E
110 114Right-handed 310
Helix 61
61
E
135 145Right-handed alpha
Helix 62
62
E
146 148Right-handed 310
Helix 63
63
E
156 160Right-handed 310
Helix 64
64
E
179 185Right-handed 310
Helix 65
65
E
186 203Right-handed alpha
Helix 66
66
E
220 228Right-handed alpha
Helix 67
67
F
38 42Right-handed 310
Helix 68
68
F
52 62Right-handed alpha
Helix 69
69
F
63 65Right-handed 310
Helix 70
70
F
66 77Right-handed alpha
Helix 71
71
F
83 98Right-handed alpha
Helix 72
72
F
99 106Right-handed alpha
Helix 73
73
F
107 114Right-handed 310
Helix 74
74
F
135 148Right-handed alpha
Helix 75
75
F
179 184Right-handed 310
Helix 76
76
F
186 191Right-handed alpha
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There are 11 sheets in PDB entry 1YFJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
46 49parallel
Strand 3
A
27 30parallel
Strand 4
A
166 170parallel
Strand 5
A
207 212parallel
Strand 6
A
254 258anti-parallel
Strand 7
A
231 234anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
218 219anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
46 49parallel
Strand 3
B
27 30parallel
Strand 4
B
166 170parallel
Strand 5
B
206 212parallel
Strand 6
B
254 258anti-parallel
Strand 7
B
231 234anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
218 219anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 153first strand
Strand 2
C
46 49parallel
Strand 3
C
27 30parallel
Strand 4
C
166 170parallel
Strand 5
C
207 215parallel
Strand 6
C
218 219anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 153first strand
Strand 2
C
46 49parallel
Strand 3
C
27 30parallel
Strand 4
C
166 170parallel
Strand 5
C
207 215parallel
Strand 6
C
252 258anti-parallel
Strand 7
C
231 234anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 153first strand
Strand 2
D
46 49parallel
Strand 3
D
27 30parallel
Strand 4
D
166 170parallel
Strand 5
D
206 212parallel
Strand 6
D
254 258anti-parallel
Strand 7
D
231 234anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 215first strand
Strand 2
D
218 219anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 153first strand
Strand 2
E
46 49parallel
Strand 3
E
27 30parallel
Strand 4
E
166 170parallel
Strand 5
E
207 209parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
211 212first strand
Strand 2
E
254 255anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 48first strand
Strand 2
F
27 30parallel
Strand 3
F
166 170parallel
Strand 4
F
207 210parallel
Strand 5
F
255 258anti-parallel
Strand 6
F
233 234anti-parallel
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