Analysis of interatomic Contacts of Structural Units in PDB entry:
1YFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YFP entry

There are 4 chains in PDB entry 1YFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PHE 64
A
 LEU 68ILE 229
B
 LYS 3PHE 64
B
 LEU 68ILE 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1YFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
57 60Right-handed 310
Helix 3
3
A
69 71Right-handed 310
Helix 4
4
A
76 81Right-handed 310
Helix 5
5
A
83 87Right-handed alpha
Helix 6
6
B
4 8Right-handed 310
Helix 7
7
B
57 60Right-handed 310
Helix 8
8
B
69 71Right-handed 310
Helix 9
9
B
76 81Right-handed 310
Helix 10
10
B
83 87Right-handed alpha
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There are 2 sheets in PDB entry 1YFP. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 36first strand
Strand 2
A
11 22anti-parallel
Strand 3
A
118 128parallel
Strand 4
A
105 115anti-parallel
Strand 5
A
92 100anti-parallel
Strand 6
A
176 187anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
148 155anti-parallel
Strand 9
A
199 208anti-parallel
Strand 10
A
217 227anti-parallel
Strand 11
A
41 48anti-parallel
Strand 12
A
29 36anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 36first strand
Strand 2
B
11 22anti-parallel
Strand 3
B
118 128parallel
Strand 4
B
105 115anti-parallel
Strand 5
B
92 100anti-parallel
Strand 6
B
176 187anti-parallel
Strand 7
B
160 170anti-parallel
Strand 8
B
148 155anti-parallel
Strand 9
B
199 208anti-parallel
Strand 10
B
217 227anti-parallel
Strand 11
B
41 48anti-parallel
Strand 12
B
29 36anti-parallel
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