Analysis of interatomic Contacts of Structural Units in PDB entry:
1YGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YGP entry

There are 2 chains in PDB entry 1YGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14THR 831
B
 THR 14THR 831
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 1YGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 4Right-handed alpha
Helix 2
2
A
7 16Right-handed alpha
Helix 3
3
A
24 36Right-handed alpha
Helix 4
4
A
43 45Right-handed 310
Helix 5
5
A
48 77Right-handed alpha
Helix 6
6
A
94 100Right-handed alpha
Helix 7
7
A
113 115Right-handed alpha
Helix 8
8
A
119 125Right-handed alpha
Helix 9
9
A
135 149Right-handed alpha
Helix 10
10
A
254 258Right-handed alpha
Helix 11
11
A
262 277Right-handed alpha
Helix 12
12
A
286 314Right-handed alpha
Helix 13
13
A
326 332Right-handed 310
Helix 14
14
A
340 355Right-handed 310
Helix 15
15
A
361 371Right-handed alpha
Helix 16
16
A
381 383Right-handed 310
Helix 17
17
A
389 395Right-handed alpha
Helix 18
18
A
397 417Right-handed alpha
Helix 19
19
A
422 428Right-handed alpha
Helix 20
20
A
441 448Right-handed alpha
Helix 21
21
A
457 465Right-handed alpha
Helix 22
22
A
469 475Right-handed alpha
Helix 23
23
A
476 478Right-handed 310
Helix 24
24
A
488 491Right-handed alpha
Helix 25
25
A
497 506Right-handed alpha
Helix 26
26
A
510 513Right-handed alpha
Helix 27
27
A
515 526Right-handed 310
Helix 28
28
A
529 553Right-handed alpha
Helix 29
29
A
558 560Right-handed 310
Helix 30
30
A
572 574Right-handed 310
Helix 31
31
A
576 592Right-handed alpha
Helix 32
32
A
592 597Right-handed alpha
Helix 33
33
A
614 630Right-handed alpha
Helix 34
34
A
634 636Right-handed 310
Helix 35
35
A
650 659Right-handed alpha
Helix 36
36
A
676 684Right-handed alpha
Helix 37
37
A
694 703Right-handed 310
Helix 38
38
A
705 707Right-handed 310
Helix 39
39
A
716 730Right-handed alpha
Helix 40
40
A
736 745Right-handed alpha
Helix 41
41
A
752 754Right-handed 310
Helix 42
42
A
759 766Right-handed alpha
Helix 43
43
A
773 793Right-handed alpha
Helix 44
44
A
795 811Right-handed alpha
Helix 45
45
A
813 823Right-handed alpha
Helix 46
45
B
6 4Right-handed alpha
Helix 47
47
B
7 16Right-handed alpha
Helix 48
48
B
24 36Right-handed alpha
Helix 49
49
B
43 45Right-handed 310
Helix 50
50
B
48 77Right-handed alpha
Helix 51
51
B
94 100Right-handed alpha
Helix 52
52
B
113 115Right-handed alpha
Helix 53
53
B
119 125Right-handed alpha
Helix 54
54
B
135 149Right-handed alpha
Helix 55
55
B
254 258Right-handed alpha
Helix 56
56
B
262 277Right-handed alpha
Helix 57
57
B
286 314Right-handed alpha
Helix 58
58
B
326 332Right-handed 310
Helix 59
59
B
340 355Right-handed 310
Helix 60
60
B
361 371Right-handed alpha
Helix 61
61
B
381 383Right-handed 310
Helix 62
62
B
389 395Right-handed alpha
Helix 63
63
B
397 417Right-handed alpha
Helix 64
64
B
422 428Right-handed alpha
Helix 65
65
B
441 448Right-handed alpha
Helix 66
66
B
457 465Right-handed alpha
Helix 67
67
B
469 475Right-handed alpha
Helix 68
68
B
476 478Right-handed 310
Helix 69
69
B
488 491Right-handed alpha
Helix 70
70
B
497 506Right-handed alpha
Helix 71
71
B
510 513Right-handed alpha
Helix 72
72
B
515 526Right-handed 310
Helix 73
73
B
529 553Right-handed alpha
Helix 74
74
B
558 560Right-handed 310
Helix 75
75
B
572 574Right-handed 310
Helix 76
76
B
576 592Right-handed alpha
Helix 77
77
B
592 597Right-handed alpha
Helix 78
78
B
614 630Right-handed alpha
Helix 79
79
B
634 636Right-handed 310
Helix 80
80
B
650 659Right-handed alpha
Helix 81
81
B
676 684Right-handed alpha
Helix 82
82
B
694 703Right-handed 310
Helix 83
83
B
705 707Right-handed 310
Helix 84
84
B
716 730Right-handed alpha
Helix 85
85
B
736 745Right-handed alpha
Helix 86
86
B
752 754Right-handed 310
Helix 87
87
B
759 766Right-handed alpha
Helix 88
88
B
773 793Right-handed alpha
Helix 89
89
B
795 811Right-handed alpha
Helix 90
90
B
813 823Right-handed alpha
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There are 12 sheets in PDB entry 1YGP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 202first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
238 248anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
81 85parallel
Strand 6
A
333 338parallel
Strand 7
A
372 376parallel
Strand 8
A
452 454parallel
Strand 9
A
479 481parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
214 216anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
439 440anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 567first strand
Strand 2
A
601 606parallel
Strand 3
A
640 645parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 665first strand
Strand 2
A
687 691parallel
Strand 3
A
709 711parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 202first strand
Strand 2
B
219 231anti-parallel
Strand 3
B
238 248anti-parallel
Strand 4
B
154 159parallel
Strand 5
B
81 85parallel
Strand 6
B
333 338parallel
Strand 7
B
372 376parallel
Strand 8
B
452 454parallel
Strand 9
B
479 481parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 171first strand
Strand 2
B
174 178anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
214 216anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
439 440anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
562 567first strand
Strand 2
B
601 606parallel
Strand 3
B
640 645parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
662 665first strand
Strand 2
B
687 691parallel
Strand 3
B
709 711parallel
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