Analysis of interatomic Contacts of Structural Units in PDB entry:
1YGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YGR entry

There are 6 chains in PDB entry 1YGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 599PRO 1205
B
 LYS 600ASN 1208
C
 ARG 2001GLU 2003
C
 ASP 2005VAL 2006
D
 ARG 2001GLU 2003
D
 ASP 2005VAL 2006
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 1YGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
612 634Right-handed alpha
Helix 2
2
A
649 656Right-handed 310
Helix 3
3
A
707 718Right-handed alpha
Helix 4
4
A
802 814Right-handed alpha
Helix 5
5
A
832 847Right-handed alpha
Helix 6
6
A
847 852Right-handed alpha
Helix 7
7
A
855 865Right-handed alpha
Helix 8
8
A
873 891Right-handed alpha
Helix 9
9
A
896 898Right-handed 310
Helix 10
10
A
899 908Right-handed alpha
Helix 11
11
A
917 926Right-handed alpha
Helix 12
12
A
936 940Right-handed 310
Helix 13
13
A
942 946Right-handed 310
Helix 14
14
A
1017 1028Right-handed alpha
Helix 15
15
A
1108 1121Right-handed alpha
Helix 16
16
A
1150 1167Right-handed alpha
Helix 17
17
A
1171 1183Right-handed alpha
Helix 18
18
A
1189 1203Right-handed alpha
Helix 19
19
B
612 632Right-handed alpha
Helix 20
20
B
649 656Right-handed 310
Helix 21
21
B
707 718Right-handed alpha
Helix 22
22
B
802 814Right-handed alpha
Helix 23
23
B
832 847Right-handed alpha
Helix 24
24
B
847 852Right-handed alpha
Helix 25
25
B
855 865Right-handed alpha
Helix 26
26
B
873 891Right-handed alpha
Helix 27
27
B
899 909Right-handed alpha
Helix 28
28
B
917 926Right-handed alpha
Helix 29
29
B
936 940Right-handed 310
Helix 30
30
B
942 946Right-handed 310
Helix 31
31
B
1017 1028Right-handed alpha
Helix 32
32
B
1108 1122Right-handed alpha
Helix 33
33
B
1150 1167Right-handed alpha
Helix 34
34
B
1171 1183Right-handed alpha
Helix 35
35
B
1189 1203Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1YGR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 609first strand
Strand 2
A
853 854anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 670first strand
Strand 2
A
682 688anti-parallel
Strand 3
A
697 700anti-parallel
Strand 4
A
824 827parallel
Strand 5
A
722 725parallel
Strand 6
A
784 791parallel
Strand 7
A
767 776anti-parallel
Strand 8
A
754 763anti-parallel
Strand 9
A
748 751anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 731first strand
Strand 2
A
734 735anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
995 999first strand
Strand 2
A
1006 1011anti-parallel
Strand 3
A
1140 1144parallel
Strand 4
A
1032 1035parallel
Strand 5
A
1090 1097parallel
Strand 6
A
1074 1081anti-parallel
Strand 7
A
1065 1070anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1041first strand
Strand 2
A
1044 1045anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1057 1058first strand
Strand 2
A
1061 1062anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
608 609first strand
Strand 2
B
853 854anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
668 670first strand
Strand 2
B
682 688anti-parallel
Strand 3
B
697 700anti-parallel
Strand 4
B
824 827parallel
Strand 5
B
722 725parallel
Strand 6
B
784 791parallel
Strand 7
B
767 776anti-parallel
Strand 8
B
754 763anti-parallel
Strand 9
B
748 751anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
730 731first strand
Strand 2
B
734 735anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
995 999first strand
Strand 2
B
1006 1011anti-parallel
Strand 3
B
1140 1144parallel
Strand 4
B
1032 1035parallel
Strand 5
B
1090 1097parallel
Strand 6
B
1074 1081anti-parallel
Strand 7
B
1065 1070anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1040 1041first strand
Strand 2
B
1044 1045anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1057 1058first strand
Strand 2
B
1061 1062anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il