Analysis of interatomic Contacts of Structural Units in PDB entry:
1YH7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YH7 entry

There is 1 chain in PDB entry 1YH7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11LEU 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 1YH7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
45 49Right-handed 310
Helix 3
3
A
91 97Right-handed 310
Helix 4
4
A
105 117Right-handed alpha
Helix 5
5
A
118 120Right-handed 310
Helix 6
6
A
140 157Right-handed alpha
Helix 7
7
A
162 176Right-handed alpha
Helix 8
8
A
184 193Right-handed alpha
Helix 9
9
A
234 251Right-handed alpha
Helix 10
10
A
259 267Right-handed alpha
Helix 11
11
A
268 270Right-handed 310
Helix 12
12
A
271 298Right-handed alpha
Helix 13
13
A
299 317Right-handed alpha
Helix 14
14
A
322 335Right-handed alpha
Helix 15
15
A
360 373Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1YH7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
73 77anti-parallel
Strand 3
A
125 131parallel
Strand 4
A
51 67anti-parallel
Strand 5
A
197 202anti-parallel
Strand 6
A
208 212anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
73 77anti-parallel
Strand 3
A
125 131parallel
Strand 4
A
51 67anti-parallel
Strand 5
A
31 41anti-parallel
Strand 6
A
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 343first strand
Strand 2
A
351 357anti-parallel
Strand 3
A
218 224anti-parallel
Strand 4
A
377 380anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il