Analysis of interatomic Contacts of Structural Units in PDB entry:
1YHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YHJ entry

There is 1 chain in PDB entry 1YHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6LEU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1YHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
58 72Right-handed alpha
Helix 3
3
A
87 105Right-handed alpha
Helix 4
4
A
131 139Right-handed alpha
Helix 5
5
A
140 144Right-handed 310
Helix 6
6
A
150 159Right-handed alpha
Helix 7
7
A
164 177Right-handed alpha
Helix 8
8
A
232 248Right-handed alpha
Helix 9
9
A
251 278Right-handed alpha
Helix 10
10
A
293 295Right-handed 310
Helix 11
11
A
296 302Right-handed alpha
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There are 3 sheets in PDB entry 1YHJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
35 43anti-parallel
Strand 3
A
7 14parallel
Strand 4
A
79 82parallel
Strand 5
A
109 112parallel
Strand 6
A
146 147parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
124 126anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
198 205anti-parallel
Strand 3
A
217 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il