Analysis of interatomic Contacts of Structural Units in PDB entry:
1YHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YHM entry

There are 3 chains in PDB entry 1YHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 362
B
 MSE 1LYS 362
C
 MSE 1LYS 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 1YHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 26Right-handed alpha
Helix 2
2
A
29 45Right-handed alpha
Helix 3
3
A
49 66Right-handed alpha
Helix 4
4
A
69 103Right-handed alpha
Helix 5
5
A
113 116Right-handed 310
Helix 6
6
A
120 143Right-handed alpha
Helix 7
7
A
148 172Right-handed alpha
Helix 8
8
A
176 180Right-handed 310
Helix 9
9
A
196 208Right-handed alpha
Helix 10
10
A
208 213Right-handed alpha
Helix 11
11
A
213 224Right-handed alpha
Helix 12
12
A
226 230Right-handed 310
Helix 13
13
A
231 257Right-handed alpha
Helix 14
14
A
258 263Right-handed alpha
Helix 15
15
A
275 283Right-handed alpha
Helix 16
16
A
286 297Right-handed alpha
Helix 17
17
A
301 315Right-handed alpha
Helix 18
18
A
316 341Right-handed alpha
Helix 19
19
A
343 360Right-handed alpha
Helix 20
20
B
3 27Right-handed alpha
Helix 21
21
B
29 45Right-handed alpha
Helix 22
22
B
49 64Right-handed alpha
Helix 23
23
B
69 103Right-handed alpha
Helix 24
24
B
113 116Right-handed 310
Helix 25
25
B
120 143Right-handed alpha
Helix 26
26
B
148 172Right-handed alpha
Helix 27
27
B
176 180Right-handed 310
Helix 28
28
B
196 208Right-handed alpha
Helix 29
29
B
208 213Right-handed alpha
Helix 30
30
B
213 224Right-handed alpha
Helix 31
31
B
226 230Right-handed 310
Helix 32
32
B
231 257Right-handed alpha
Helix 33
33
B
258 263Right-handed alpha
Helix 34
34
B
267 272Right-handed alpha
Helix 35
35
B
275 283Right-handed alpha
Helix 36
36
B
286 297Right-handed alpha
Helix 37
37
B
301 315Right-handed alpha
Helix 38
38
B
316 341Right-handed alpha
Helix 39
39
B
343 359Right-handed alpha
Helix 40
40
C
3 26Right-handed alpha
Helix 41
41
C
29 45Right-handed alpha
Helix 42
42
C
49 65Right-handed alpha
Helix 43
43
C
69 102Right-handed alpha
Helix 44
44
C
113 116Right-handed 310
Helix 45
45
C
119 143Right-handed alpha
Helix 46
46
C
148 172Right-handed alpha
Helix 47
47
C
176 180Right-handed 310
Helix 48
48
C
196 208Right-handed alpha
Helix 49
49
C
208 213Right-handed alpha
Helix 50
50
C
213 224Right-handed alpha
Helix 51
51
C
226 230Right-handed 310
Helix 52
52
C
231 257Right-handed alpha
Helix 53
53
C
258 263Right-handed alpha
Helix 54
54
C
275 285Right-handed alpha
Helix 55
55
C
286 297Right-handed alpha
Helix 56
56
C
301 315Right-handed alpha
Helix 57
57
C
316 341Right-handed alpha
Helix 58
58
C
343 359Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1YHM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
110 111anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il