Analysis of interatomic Contacts of Structural Units in PDB entry:
1YJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YJ7 entry

There are 4 chains in PDB entry 1YJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 20SER 186
B
 LYS 21SER 186
C
 LYS 21SER 185
D
 LYS 21GLY 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1YJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 43Right-handed alpha
Helix 2
2
A
65 76Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
98 119Right-handed alpha
Helix 5
5
A
155 157Right-handed 310
Helix 6
6
A
158 170Right-handed alpha
Helix 7
7
A
174 176Right-handed 310
Helix 8
8
B
29 43Right-handed alpha
Helix 9
9
B
65 76Right-handed alpha
Helix 10
10
B
85 90Right-handed alpha
Helix 11
11
B
98 119Right-handed alpha
Helix 12
12
B
155 157Right-handed 310
Helix 13
13
B
158 170Right-handed alpha
Helix 14
14
B
174 176Right-handed 310
Helix 15
15
C
29 43Right-handed alpha
Helix 16
16
C
65 76Right-handed alpha
Helix 17
17
C
85 90Right-handed alpha
Helix 18
18
C
98 119Right-handed alpha
Helix 19
19
C
155 157Right-handed 310
Helix 20
20
C
158 170Right-handed alpha
Helix 21
21
C
174 176Right-handed 310
Helix 22
22
D
29 43Right-handed alpha
Helix 23
23
D
65 76Right-handed alpha
Helix 24
24
D
85 90Right-handed alpha
Helix 25
25
D
98 119Right-handed alpha
Helix 26
26
D
155 157Right-handed 310
Helix 27
27
D
158 170Right-handed alpha
Helix 28
28
D
174 176Right-handed 310
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There are 8 sheets in PDB entry 1YJ7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
57 62anti-parallel
Strand 3
A
48 51anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 132first strand
Strand 2
A
142 149anti-parallel
Strand 3
A
178 184parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 28first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
47 51anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 132first strand
Strand 2
B
142 149anti-parallel
Strand 3
B
178 184parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 28first strand
Strand 2
C
57 61anti-parallel
Strand 3
C
47 51anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 132first strand
Strand 2
C
142 149anti-parallel
Strand 3
C
178 184parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 28first strand
Strand 2
D
57 61anti-parallel
Strand 3
D
47 51anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 132first strand
Strand 2
D
142 149anti-parallel
Strand 3
D
178 184parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il