Analysis of interatomic Contacts of Structural Units in PDB entry:
1YJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YJ8 entry

There are 3 chains in PDB entry 1YJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 10GLN 372
B
 TYR 10GLN 372
C
 TYR 10GLN 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 1YJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 20Right-handed alpha
Helix 2
2
A
30 47Right-handed alpha
Helix 3
3
A
67 76Right-handed alpha
Helix 4
4
A
97 102Right-handed alpha
Helix 5
5
A
112 124Right-handed alpha
Helix 6
6
A
153 162Right-handed alpha
Helix 7
7
A
174 180Right-handed alpha
Helix 8
8
A
192 204Right-handed alpha
Helix 9
9
A
216 239Right-handed alpha
Helix 10
10
A
242 265Right-handed alpha
Helix 11
11
A
269 275Right-handed 310
Helix 12
12
A
278 287Right-handed alpha
Helix 13
13
A
290 302Right-handed alpha
Helix 14
14
A
306 316Right-handed alpha
Helix 15
15
A
320 336Right-handed alpha
Helix 16
16
A
338 341Right-handed 310
Helix 17
17
A
342 354Right-handed alpha
Helix 18
18
A
359 366Right-handed alpha
Helix 19
19
B
12 20Right-handed alpha
Helix 20
20
B
30 47Right-handed alpha
Helix 21
21
B
67 76Right-handed alpha
Helix 22
22
B
97 102Right-handed alpha
Helix 23
23
B
112 124Right-handed alpha
Helix 24
24
B
153 162Right-handed alpha
Helix 25
25
B
174 180Right-handed alpha
Helix 26
26
B
192 204Right-handed alpha
Helix 27
27
B
216 239Right-handed alpha
Helix 28
28
B
242 265Right-handed alpha
Helix 29
29
B
269 275Right-handed 310
Helix 30
30
B
278 288Right-handed alpha
Helix 31
31
B
288 299Right-handed alpha
Helix 32
32
B
306 314Right-handed alpha
Helix 33
33
B
320 336Right-handed alpha
Helix 34
34
B
338 341Right-handed 310
Helix 35
35
B
342 354Right-handed alpha
Helix 36
36
B
359 366Right-handed alpha
Helix 37
37
C
12 20Right-handed alpha
Helix 38
38
C
30 47Right-handed alpha
Helix 39
39
C
67 76Right-handed alpha
Helix 40
40
C
97 102Right-handed alpha
Helix 41
41
C
112 124Right-handed alpha
Helix 42
42
C
153 162Right-handed alpha
Helix 43
43
C
174 180Right-handed alpha
Helix 44
44
C
192 204Right-handed alpha
Helix 45
45
C
216 239Right-handed alpha
Helix 46
46
C
242 265Right-handed alpha
Helix 47
47
C
269 275Right-handed 310
Helix 48
48
C
278 288Right-handed alpha
Helix 49
49
C
291 301Right-handed alpha
Helix 50
50
C
306 314Right-handed alpha
Helix 51
51
C
320 336Right-handed alpha
Helix 52
52
C
342 354Right-handed alpha
Helix 53
53
C
359 366Right-handed alpha
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There are 6 sheets in PDB entry 1YJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
54 57parallel
Strand 3
A
24 27parallel
Strand 4
A
106 109parallel
Strand 5
A
136 139parallel
Strand 6
A
166 170parallel
Strand 7
A
184 189anti-parallel
Strand 8
A
208 213parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
150 152anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
54 57parallel
Strand 3
B
24 27parallel
Strand 4
B
106 109parallel
Strand 5
B
136 139parallel
Strand 6
B
166 170parallel
Strand 7
B
184 189anti-parallel
Strand 8
B
208 213parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
150 152anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 94first strand
Strand 2
C
54 57parallel
Strand 3
C
24 27parallel
Strand 4
C
106 109parallel
Strand 5
C
136 139parallel
Strand 6
C
166 170parallel
Strand 7
C
184 189anti-parallel
Strand 8
C
208 213parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 147first strand
Strand 2
C
150 152anti-parallel
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