Analysis of interatomic Contacts of Structural Units in PDB entry:
1YJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YJG entry

There are 4 chains in PDB entry 1YJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 45LEU 201
B
 THR 45LEU 201
D
 ASN 47LEU 201
E
 THR 45LEU 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1YJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 73Right-handed alpha
Helix 2
2
A
91 114Right-handed alpha
Helix 3
3
A
119 143Right-handed alpha
Helix 4
4
A
143 148Right-handed alpha
Helix 5
5
A
153 162Right-handed alpha
Helix 6
6
A
172 200Right-handed alpha
Helix 7
7
B
46 73Right-handed alpha
Helix 8
8
B
91 114Right-handed alpha
Helix 9
9
B
119 143Right-handed alpha
Helix 10
10
B
143 148Right-handed alpha
Helix 11
11
B
153 162Right-handed alpha
Helix 12
12
B
172 201Right-handed alpha
Helix 13
13
D
47 74Right-handed alpha
Helix 14
14
D
91 114Right-handed alpha
Helix 15
15
D
119 143Right-handed alpha
Helix 16
16
D
143 148Right-handed alpha
Helix 17
17
D
153 162Right-handed alpha
Helix 18
18
D
172 200Right-handed alpha
Helix 19
19
E
45 73Right-handed alpha
Helix 20
20
E
91 114Right-handed alpha
Helix 21
21
E
119 143Right-handed alpha
Helix 22
22
E
143 148Right-handed alpha
Helix 23
23
E
153 162Right-handed alpha
Helix 24
24
E
172 199Right-handed alpha
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There are 4 sheets in PDB entry 1YJG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
83 86anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
83 86anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 80first strand
Strand 2
D
83 86anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
77 80first strand
Strand 2
E
83 86anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il