Analysis of interatomic Contacts of Structural Units in PDB entry:
1YLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YLE entry

There is 1 chain in PDB entry 1YLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1SER 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1YLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
11 22Right-handed alpha
Helix 3
3
A
32 49Right-handed alpha
Helix 4
4
A
130 133Right-handed 310
Helix 5
5
A
135 152Right-handed alpha
Helix 6
6
A
153 156Right-handed 310
Helix 7
7
A
174 180Right-handed alpha
Helix 8
8
A
181 184Right-handed 310
Helix 9
9
A
188 199Right-handed alpha
Helix 10
10
A
216 218Right-handed 310
Helix 11
11
A
219 226Right-handed alpha
Helix 12
12
A
230 232Right-handed 310
Helix 13
13
A
233 244Right-handed alpha
Helix 14
14
A
267 272Right-handed alpha
Helix 15
15
A
318 326Right-handed alpha
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There are 2 sheets in PDB entry 1YLE. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
58 65anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
121 128anti-parallel
Strand 5
A
159 163parallel
Strand 6
A
258 263anti-parallel
Strand 7
A
246 251anti-parallel
Strand 8
A
89 99anti-parallel
Strand 9
A
104 114anti-parallel
Strand 10
A
213 214anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 307first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
332 337anti-parallel
Strand 4
A
274 280anti-parallel
Strand 5
A
315 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il