Analysis of interatomic Contacts of Structural Units in PDB entry:
1YLK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YLK entry

There are 4 chains in PDB entry 1YLK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 163
B
 GLY 1PRO 163
C
 GLY 1PRO 163
D
 GLY 1PRO 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1YLK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 17Right-handed alpha
Helix 2
2
A
41 47Right-handed alpha
Helix 3
3
A
64 77Right-handed alpha
Helix 4
4
A
91 95Right-handed 310
Helix 5
5
A
97 110Right-handed alpha
Helix 6
6
A
122 136Right-handed alpha
Helix 7
7
B
2 18Right-handed alpha
Helix 8
8
B
41 47Right-handed alpha
Helix 9
9
B
64 77Right-handed alpha
Helix 10
10
B
91 95Right-handed 310
Helix 11
11
B
97 110Right-handed alpha
Helix 12
12
B
122 137Right-handed alpha
Helix 13
13
C
2 17Right-handed alpha
Helix 14
14
C
41 47Right-handed alpha
Helix 15
15
C
64 77Right-handed alpha
Helix 16
16
C
91 95Right-handed 310
Helix 17
17
C
97 110Right-handed alpha
Helix 18
18
C
122 136Right-handed alpha
Helix 19
19
D
2 17Right-handed alpha
Helix 20
20
D
41 46Right-handed alpha
Helix 21
21
D
64 77Right-handed alpha
Helix 22
22
D
91 95Right-handed 310
Helix 23
23
D
97 110Right-handed alpha
Helix 24
24
D
122 137Right-handed alpha
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There are 4 sheets in PDB entry 1YLK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
30 35parallel
Strand 3
A
82 88parallel
Strand 4
A
145 151parallel
Strand 5
A
158 161anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 58first strand
Strand 2
B
30 35parallel
Strand 3
B
82 88parallel
Strand 4
B
145 151parallel
Strand 5
B
158 161anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 58first strand
Strand 2
C
30 35parallel
Strand 3
C
82 88parallel
Strand 4
C
145 151parallel
Strand 5
C
158 161anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 58first strand
Strand 2
D
30 35parallel
Strand 3
D
82 88parallel
Strand 4
D
145 151parallel
Strand 5
D
158 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il