Analysis of interatomic Contacts of Structural Units in PDB entry:
1YLV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YLV entry

There is 1 chain in PDB entry 1YLV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1YLV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 16Right-handed 310
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
25 30Right-handed alpha
Helix 4
4
A
38 40Right-handed 310
Helix 5
5
A
68 81Right-handed 310
Helix 6
6
A
103 106Right-handed 310
Helix 7
7
A
111 122Right-handed alpha
Helix 8
8
A
154 171Right-handed alpha
Helix 9
9
A
185 195Right-handed alpha
Helix 10
10
A
217 223Right-handed alpha
Helix 11
11
A
242 254Right-handed alpha
Helix 12
12
A
266 278Right-handed 310
Helix 13
13
A
290 302Right-handed alpha
Helix 14
14
A
307 321Right-handed alpha
Helix 15
15
A
331 337Right-handed alpha
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There are 3 sheets in PDB entry 1YLV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
85 91parallel
Strand 3
A
127 132parallel
Strand 4
A
175 178parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
64 66anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
283 288parallel
Strand 3
A
325 328parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il