Analysis of interatomic Contacts of Structural Units in PDB entry:
1YM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YM5 entry

There is 1 chain in PDB entry 1YM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2HIS 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1YM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 36Right-handed 310
Helix 2
2
A
37 49Right-handed alpha
Helix 3
3
A
80 95Right-handed alpha
Helix 4
4
A
134 146Right-handed alpha
Helix 5
5
A
169 176Right-handed alpha
Helix 6
6
A
179 191Right-handed alpha
Helix 7
7
A
217 220Right-handed 310
Helix 8
8
A
227 243Right-handed alpha
Helix 9
9
A
256 259Right-handed 310
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There are 2 sheets in PDB entry 1YM5. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
66 71anti-parallel
Strand 3
A
102 107parallel
Strand 4
A
110 117anti-parallel
Strand 5
A
120 124anti-parallel
Strand 6
A
276 282anti-parallel
Strand 7
A
262 270anti-parallel
Strand 8
A
248 254anti-parallel
Strand 9
A
209 216parallel
Strand 10
A
221 224anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
154 157anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
194 200parallel
Strand 5
A
209 216anti-parallel
Strand 6
A
248 254parallel
Strand 7
A
262 270anti-parallel
Strand 8
A
276 282anti-parallel
Strand 9
A
120 124anti-parallel
Strand 10
A
110 117anti-parallel
Strand 11
A
102 107anti-parallel
Strand 12
A
66 71parallel
Strand 13
A
53 57anti-parallel
Strand 14
A
21 27parallel
Strand 15
A
3 12anti-parallel
Strand 16
A
284 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il