Analysis of interatomic Contacts of Structural Units in PDB entry:
1YM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YM7 entry

There are 4 chains in PDB entry 1YM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29GLN 656
B
 SER 29GLN 656
C
 SER 29GLN 656
D
 SER 29GLN 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 1YM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 38Right-handed 310
Helix 2
2
A
39 50Right-handed alpha
Helix 3
3
A
54 61Right-handed alpha
Helix 4
4
A
61 75Right-handed alpha
Helix 5
5
A
78 94Right-handed alpha
Helix 6
6
A
97 113Right-handed alpha
Helix 7
7
A
113 119Right-handed alpha
Helix 8
8
A
125 137Right-handed alpha
Helix 9
9
A
146 159Right-handed alpha
Helix 10
10
A
159 167Right-handed alpha
Helix 11
11
A
168 183Right-handed alpha
Helix 12
12
A
187 189Right-handed 310
Helix 13
13
A
224 230Right-handed alpha
Helix 14
14
A
232 247Right-handed alpha
Helix 15
15
A
278 287Right-handed alpha
Helix 16
16
A
290 311Right-handed alpha
Helix 17
17
A
319 321Right-handed 310
Helix 18
18
A
358 363Right-handed alpha
Helix 19
19
A
370 387Right-handed alpha
Helix 20
20
A
399 409Right-handed alpha
Helix 21
21
A
418 429Right-handed alpha
Helix 22
22
A
443 450Right-handed alpha
Helix 23
23
A
451 454Right-handed 310
Helix 24
24
A
457 463Right-handed alpha
Helix 25
25
A
502 506Right-handed 310
Helix 26
26
A
513 525Right-handed alpha
Helix 27
27
A
525 539Right-handed alpha
Helix 28
28
A
541 546Right-handed alpha
Helix 29
29
A
636 655Right-handed alpha
Helix 30
30
B
36 38Right-handed 310
Helix 31
31
B
39 50Right-handed alpha
Helix 32
32
B
54 61Right-handed alpha
Helix 33
33
B
61 75Right-handed alpha
Helix 34
34
B
78 94Right-handed alpha
Helix 35
35
B
97 113Right-handed alpha
Helix 36
36
B
113 119Right-handed alpha
Helix 37
37
B
125 137Right-handed alpha
Helix 38
38
B
146 159Right-handed alpha
Helix 39
39
B
159 167Right-handed alpha
Helix 40
40
B
168 183Right-handed alpha
Helix 41
41
B
187 189Right-handed 310
Helix 42
42
B
224 230Right-handed alpha
Helix 43
43
B
232 247Right-handed alpha
Helix 44
44
B
278 287Right-handed alpha
Helix 45
45
B
290 311Right-handed alpha
Helix 46
46
B
319 321Right-handed 310
Helix 47
47
B
358 363Right-handed alpha
Helix 48
48
B
370 387Right-handed alpha
Helix 49
49
B
399 409Right-handed alpha
Helix 50
50
B
418 429Right-handed alpha
Helix 51
51
B
443 450Right-handed alpha
Helix 52
52
B
451 454Right-handed 310
Helix 53
53
B
457 463Right-handed alpha
Helix 54
54
B
499 504Right-handed alpha
Helix 55
55
B
513 525Right-handed alpha
Helix 56
56
B
525 543Right-handed alpha
Helix 57
57
B
636 655Right-handed alpha
Helix 58
58
C
36 38Right-handed 310
Helix 59
59
C
39 50Right-handed alpha
Helix 60
60
C
54 61Right-handed alpha
Helix 61
61
C
61 75Right-handed alpha
Helix 62
62
C
78 94Right-handed alpha
Helix 63
63
C
97 113Right-handed alpha
Helix 64
64
C
113 119Right-handed alpha
Helix 65
65
C
125 137Right-handed alpha
Helix 66
66
C
146 159Right-handed alpha
Helix 67
67
C
159 167Right-handed alpha
Helix 68
68
C
168 183Right-handed alpha
Helix 69
69
C
187 189Right-handed 310
Helix 70
70
C
224 231Right-handed alpha
Helix 71
71
C
232 247Right-handed alpha
Helix 72
72
C
278 287Right-handed alpha
Helix 73
73
C
290 311Right-handed alpha
Helix 74
74
C
319 321Right-handed 310
Helix 75
75
C
358 363Right-handed alpha
Helix 76
76
C
370 387Right-handed alpha
Helix 77
77
C
399 409Right-handed alpha
Helix 78
78
C
418 429Right-handed alpha
Helix 79
79
C
443 450Right-handed alpha
Helix 80
80
C
451 454Right-handed 310
Helix 81
81
C
457 463Right-handed alpha
Helix 82
82
C
499 504Right-handed alpha
Helix 83
83
C
513 525Right-handed alpha
Helix 84
84
C
525 541Right-handed alpha
Helix 85
85
C
636 655Right-handed alpha
Helix 86
86
D
36 38Right-handed 310
Helix 87
87
D
39 50Right-handed alpha
Helix 88
88
D
54 61Right-handed alpha
Helix 89
89
D
61 75Right-handed alpha
Helix 90
90
D
78 94Right-handed alpha
Helix 91
91
D
97 113Right-handed alpha
Helix 92
92
D
113 119Right-handed alpha
Helix 93
93
D
125 137Right-handed alpha
Helix 94
94
D
146 159Right-handed alpha
Helix 95
95
D
159 167Right-handed alpha
Helix 96
96
D
168 183Right-handed alpha
Helix 97
97
D
187 189Right-handed 310
Helix 98
98
D
224 231Right-handed alpha
Helix 99
99
D
232 247Right-handed alpha
Helix 100
100
D
278 287Right-handed alpha
Helix 101
101
D
290 311Right-handed alpha
Helix 102
102
D
319 321Right-handed 310
Helix 103
103
D
358 363Right-handed alpha
Helix 104
104
D
370 387Right-handed alpha
Helix 105
105
D
399 409Right-handed alpha
Helix 106
106
D
418 429Right-handed alpha
Helix 107
107
D
443 450Right-handed alpha
Helix 108
108
D
451 454Right-handed 310
Helix 109
109
D
457 463Right-handed alpha
Helix 110
110
D
502 506Right-handed 310
Helix 111
111
D
513 525Right-handed alpha
Helix 112
112
D
525 539Right-handed alpha
Helix 113
113
D
636 655Right-handed alpha
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There are 19 sheets in PDB entry 1YM7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
216 223anti-parallel
Strand 4
A
266 272anti-parallel
Strand 5
A
257 263anti-parallel
Strand 6
A
511 512anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
340 341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
331 333anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 600first strand
Strand 2
A
587 591anti-parallel
Strand 3
A
575 584anti-parallel
Strand 4
A
564 569anti-parallel
Strand 5
A
629 633anti-parallel
Strand 6
A
619 623anti-parallel
Strand 7
A
608 612anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 199first strand
Strand 2
B
204 210anti-parallel
Strand 3
B
216 223anti-parallel
Strand 4
B
266 272anti-parallel
Strand 5
B
257 263anti-parallel
Strand 6
B
511 512anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
340 341anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 325first strand
Strand 2
B
331 333anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
561 569first strand
Strand 2
B
575 584anti-parallel
Strand 3
B
587 591anti-parallel
Strand 4
B
599 600anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 612first strand
Strand 2
B
619 624anti-parallel
Strand 3
B
629 632anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 199first strand
Strand 2
C
204 210anti-parallel
Strand 3
C
216 223anti-parallel
Strand 4
C
266 272anti-parallel
Strand 5
C
257 263anti-parallel
Strand 6
C
511 512anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 314first strand
Strand 2
C
340 341anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 325first strand
Strand 2
C
331 333anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
561 569first strand
Strand 2
C
575 584anti-parallel
Strand 3
C
587 591anti-parallel
Strand 4
C
599 600anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
606 612first strand
Strand 2
C
619 624anti-parallel
Strand 3
C
629 632anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
191 199first strand
Strand 2
D
204 210anti-parallel
Strand 3
D
216 223anti-parallel
Strand 4
D
266 272anti-parallel
Strand 5
D
257 263anti-parallel
Strand 6
D
511 512anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
313 314first strand
Strand 2
D
340 341anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
323 325first strand
Strand 2
D
331 333anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
561 569first strand
Strand 2
D
575 584anti-parallel
Strand 3
D
587 591anti-parallel
Strand 4
D
599 600anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
608 612first strand
Strand 2
D
619 623anti-parallel
Strand 3
D
629 632anti-parallel
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