Analysis of interatomic Contacts of Structural Units in PDB entry:
1YME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YME entry

There is 1 chain in PDB entry 1YME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 1YME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
73 89Right-handed alpha
Helix 3
3
A
94 102Right-handed alpha
Helix 4
4
A
113 121Right-handed alpha
Helix 5
5
A
143 145Right-handed 310
Helix 6
6
A
174 186Right-handed alpha
Helix 7
7
A
216 234Right-handed alpha
Helix 8
8
A
243 246Right-handed alpha
Helix 9
9
A
254 261Right-handed alpha
Helix 10
10
A
283 305Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 1YME.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
201 204parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
189 196parallel
Strand 5
A
61 66parallel
Strand 6
A
104 108parallel
Strand 7
A
46 52anti-parallel
Strand 8
A
33 40anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il