Analysis of interatomic Contacts of Structural Units in PDB entry:
1YMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YMJ entry

There are 2 chains in PDB entry 1YMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ILE 293
B
 MET 1SER 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1YMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 24Right-handed alpha
Helix 2
2
A
25 38Right-handed alpha
Helix 3
3
A
52 64Right-handed alpha
Helix 4
4
A
65 71Right-handed 310
Helix 5
5
A
72 100Right-handed alpha
Helix 6
6
A
107 143Right-handed alpha
Helix 7
7
A
155 168Right-handed alpha
Helix 8
8
A
168 173Right-handed alpha
Helix 9
9
A
176 198Right-handed alpha
Helix 10
10
A
199 201Right-handed 310
Helix 11
11
A
208 232Right-handed alpha
Helix 12
12
A
236 241Right-handed alpha
Helix 13
13
A
244 248Right-handed 310
Helix 14
14
A
252 264Right-handed alpha
Helix 15
15
A
265 269Right-handed 310
Helix 16
16
A
272 292Right-handed alpha
Helix 17
17
B
16 34Right-handed alpha
Helix 18
18
B
36 41Right-handed alpha
Helix 19
19
B
41 51Right-handed alpha
Helix 20
20
B
54 80Right-handed alpha
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There are no sheets in PDB entry 1YMJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il