Analysis of interatomic Contacts of Structural Units in PDB entry:
1YMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YMP entry

There are 2 chains in PDB entry 1YMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 107ASP 237
B
 ARG 107ASP 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1YMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
107 111Right-handed 310
Helix 2
2
A
120 129Right-handed alpha
Helix 3
3
A
132 140Right-handed alpha
Helix 4
4
A
153 161Right-handed alpha
Helix 5
5
A
163 173Right-handed alpha
Helix 6
6
A
186 195Right-handed alpha
Helix 7
7
A
196 206Right-handed alpha
Helix 8
8
A
219 227Right-handed alpha
Helix 9
9
A
229 237Right-handed alpha
Helix 10
10
B
120 129Right-handed alpha
Helix 11
11
B
130 140Right-handed alpha
Helix 12
12
B
153 161Right-handed alpha
Helix 13
13
B
163 173Right-handed alpha
Helix 14
14
B
186 195Right-handed alpha
Helix 15
15
B
196 206Right-handed alpha
Helix 16
16
B
219 227Right-handed alpha
Helix 17
17
B
229 237Right-handed alpha
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There are no sheets in PDB entry 1YMP
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