Analysis of interatomic Contacts of Structural Units in PDB entry:
1YMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YMY entry

There are 2 chains in PDB entry 1YMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 382
B
 MET 1GLN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1YMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 89Right-handed alpha
Helix 2
2
A
103 121Right-handed alpha
Helix 3
3
A
149 162Right-handed alpha
Helix 4
4
A
172 176Right-handed 310
Helix 5
5
A
177 187Right-handed alpha
Helix 6
6
A
199 209Right-handed alpha
Helix 7
7
A
229 238Right-handed alpha
Helix 8
8
A
253 265Right-handed alpha
Helix 9
9
A
312 324Right-handed alpha
Helix 10
10
A
327 335Right-handed alpha
Helix 11
11
A
336 343Right-handed alpha
Helix 12
12
A
345 350Right-handed alpha
Helix 13
13
B
76 89Right-handed alpha
Helix 14
14
B
103 121Right-handed alpha
Helix 15
15
B
153 162Right-handed alpha
Helix 16
16
B
172 176Right-handed 310
Helix 17
17
B
177 187Right-handed alpha
Helix 18
18
B
199 209Right-handed alpha
Helix 19
19
B
229 238Right-handed alpha
Helix 20
20
B
253 265Right-handed alpha
Helix 21
21
B
312 324Right-handed alpha
Helix 22
22
B
327 335Right-handed alpha
Helix 23
23
B
336 343Right-handed alpha
Helix 24
24
B
345 350Right-handed alpha
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There are 8 sheets in PDB entry 1YMY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
19 24anti-parallel
Strand 4
A
27 33anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
42 53parallel
Strand 4
A
360 363anti-parallel
Strand 5
A
369 374anti-parallel
Strand 6
A
377 381anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
92 100parallel
Strand 3
A
128 131parallel
Strand 4
A
166 171parallel
Strand 5
A
190 193parallel
Strand 6
A
213 214parallel
Strand 7
A
242 246parallel
Strand 8
A
268 271parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
66 67anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
290 294anti-parallel
Strand 3
A
299 301anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
2 10anti-parallel
Strand 3
B
19 24anti-parallel
Strand 4
B
27 33anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
2 10anti-parallel
Strand 3
B
42 53parallel
Strand 4
B
360 363anti-parallel
Strand 5
B
369 374anti-parallel
Strand 6
B
377 381anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
92 100parallel
Strand 3
B
128 131parallel
Strand 4
B
166 171parallel
Strand 5
B
190 193parallel
Strand 6
B
213 214parallel
Strand 7
B
242 246parallel
Strand 8
B
268 271parallel
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