Analysis of interatomic Contacts of Structural Units in PDB entry:
1YO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YO6 entry

There are 6 chains in PDB entry 1YO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 250
B
 MET 1PHE 250
C
 MET 1PHE 250
D
 MET 1PHE 250
E
 SER 2PHE 250
F
 SER 2PHE 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 1YO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
38 41Right-handed 310
Helix 3
3
A
42 47Right-handed alpha
Helix 4
4
A
62 78Right-handed alpha
Helix 5
5
A
79 81Right-handed 310
Helix 6
6
A
102 114Right-handed alpha
Helix 7
7
A
114 124Right-handed alpha
Helix 8
8
A
124 134Right-handed alpha
Helix 9
9
A
152 156Right-handed 310
Helix 10
10
A
169 190Right-handed alpha
Helix 11
11
A
191 194Right-handed 310
Helix 12
12
A
218 230Right-handed alpha
Helix 13
13
A
231 232Right-handed 310
Helix 14
14
A
233 237Right-handed 310
Helix 15
15
B
13 24Right-handed alpha
Helix 16
16
B
42 47Right-handed alpha
Helix 17
17
B
62 78Right-handed alpha
Helix 18
18
B
79 81Right-handed 310
Helix 19
19
B
102 114Right-handed alpha
Helix 20
20
B
114 133Right-handed alpha
Helix 21
21
B
152 156Right-handed 310
Helix 22
22
B
169 190Right-handed alpha
Helix 23
23
B
191 194Right-handed 310
Helix 24
24
B
219 230Right-handed alpha
Helix 25
25
B
231 232Right-handed 310
Helix 26
26
B
233 237Right-handed 310
Helix 27
27
C
13 26Right-handed alpha
Helix 28
28
C
42 48Right-handed alpha
Helix 29
29
C
62 78Right-handed alpha
Helix 30
30
C
79 81Right-handed 310
Helix 31
31
C
102 114Right-handed alpha
Helix 32
32
C
114 133Right-handed alpha
Helix 33
33
C
152 156Right-handed 310
Helix 34
34
C
169 190Right-handed alpha
Helix 35
35
C
191 194Right-handed 310
Helix 36
36
C
218 232Right-handed alpha
Helix 37
37
C
233 237Right-handed 310
Helix 38
38
D
13 24Right-handed alpha
Helix 39
39
D
62 78Right-handed alpha
Helix 40
40
D
79 81Right-handed 310
Helix 41
41
D
102 114Right-handed alpha
Helix 42
42
D
114 124Right-handed alpha
Helix 43
43
D
124 134Right-handed alpha
Helix 44
44
D
152 156Right-handed 310
Helix 45
45
D
169 190Right-handed alpha
Helix 46
46
D
191 194Right-handed 310
Helix 47
47
D
220 230Right-handed alpha
Helix 48
48
D
231 232Right-handed 310
Helix 49
49
D
233 237Right-handed 310
Helix 50
50
E
13 26Right-handed alpha
Helix 51
51
E
38 41Right-handed 310
Helix 52
52
E
42 47Right-handed alpha
Helix 53
53
E
62 78Right-handed alpha
Helix 54
54
E
79 81Right-handed 310
Helix 55
55
E
102 114Right-handed alpha
Helix 56
56
E
114 124Right-handed alpha
Helix 57
57
E
124 133Right-handed alpha
Helix 58
58
E
152 156Right-handed 310
Helix 59
59
E
169 190Right-handed alpha
Helix 60
60
E
218 231Right-handed alpha
Helix 61
61
E
233 237Right-handed 310
Helix 62
62
F
13 25Right-handed alpha
Helix 63
63
F
38 43Right-handed alpha
Helix 64
64
F
62 78Right-handed alpha
Helix 65
65
F
102 114Right-handed alpha
Helix 66
66
F
114 123Right-handed alpha
Helix 67
67
F
124 133Right-handed alpha
Helix 68
68
F
152 156Right-handed 310
Helix 69
69
F
169 190Right-handed alpha
Helix 70
70
F
219 230Right-handed alpha
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There are 6 sheets in PDB entry 1YO6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
31 36parallel
Strand 3
A
5 8parallel
Strand 4
A
84 87parallel
Strand 5
A
146 150parallel
Strand 6
A
196 201parallel
Strand 7
A
240 242parallel
Strand 8
A
245 247anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
31 36parallel
Strand 3
B
5 8parallel
Strand 4
B
84 87parallel
Strand 5
B
146 150parallel
Strand 6
B
196 201parallel
Strand 7
B
240 242parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 57first strand
Strand 2
C
31 36parallel
Strand 3
C
5 8parallel
Strand 4
C
84 87parallel
Strand 5
C
146 150parallel
Strand 6
C
196 201parallel
Strand 7
C
240 242parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 57first strand
Strand 2
D
31 36parallel
Strand 3
D
5 8parallel
Strand 4
D
84 87parallel
Strand 5
D
146 150parallel
Strand 6
D
196 201parallel
Strand 7
D
239 242parallel
Strand 8
D
246 247anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 57first strand
Strand 2
E
31 36parallel
Strand 3
E
5 8parallel
Strand 4
E
84 87parallel
Strand 5
E
146 150parallel
Strand 6
E
196 201parallel
Strand 7
E
240 242parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
53 57first strand
Strand 2
F
31 36parallel
Strand 3
F
5 8parallel
Strand 4
F
84 87parallel
Strand 5
F
146 150parallel
Strand 6
F
196 200parallel
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