Analysis of interatomic Contacts of Structural Units in PDB entry:
1YOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YOE entry

There is 1 chain in PDB entry 1YOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1YOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
41 56Right-handed alpha
Helix 3
3
A
103 115Right-handed alpha
Helix 4
4
A
127 137Right-handed alpha
Helix 5
5
A
138 142Right-handed 310
Helix 6
6
A
164 170Right-handed alpha
Helix 7
7
A
170 179Right-handed alpha
Helix 8
8
A
188 193Right-handed alpha
Helix 9
9
A
198 209Right-handed alpha
Helix 10
10
A
210 225Right-handed alpha
Helix 11
11
A
241 250Right-handed alpha
Helix 12
12
A
295 308Right-handed alpha
Helix 13
13
A
309 311Right-handed 310
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There are 3 sheets in PDB entry 1YOE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
28 35parallel
Strand 3
A
3 9parallel
Strand 4
A
119 123parallel
Strand 5
A
144 150parallel
Strand 6
A
184 187parallel
Strand 7
A
288 294parallel
Strand 8
A
254 259anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
237 238anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
274 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il