Analysis of interatomic Contacts of Structural Units in PDB entry:
1YOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YOK entry

There are 3 chains in PDB entry 1YOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 300ALA 538
B
 ASN 742ASP 752
C
 LYS 740ASP 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1YOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
302 310Right-handed alpha
Helix 2
2
A
314 330Right-handed alpha
Helix 3
3
A
340 362Right-handed alpha
Helix 4
4
A
365 369Right-handed 310
Helix 5
5
A
370 397Right-handed alpha
Helix 6
6
A
413 418Right-handed alpha
Helix 7
7
A
421 442Right-handed alpha
Helix 8
8
A
444 457Right-handed alpha
Helix 9
9
A
466 489Right-handed alpha
Helix 10
10
A
494 501Right-handed alpha
Helix 11
11
A
501 523Right-handed alpha
Helix 12
12
A
530 537Right-handed alpha
Helix 13
13
B
742 751Right-handed alpha
Helix 14
14
C
742 751Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1YOK.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
410 412anti-parallel
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