Analysis of interatomic Contacts of Structural Units in PDB entry:
1YOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YOO entry

There is 1 chain in PDB entry 1YOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5LEU 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1YOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 26Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
A
93 96Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
141 149Right-handed alpha
Helix 7
7
A
170 177Right-handed alpha
Helix 8
8
A
202 215Right-handed alpha
Helix 9
9A
A
233 236Right-handed alpha
Helix 10
9B
A
238 246Right-handed alpha
Helix 11
11
A
277 292Right-handed alpha
Helix 12
12
A
300 311Right-handed alpha
Helix 13
13
A
313 343Right-handed alpha
Helix 14
15
A
367 377Right-handed alpha
Helix 15
16
A
394 408Right-handed alpha
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There are 4 sheets in PDB entry 1YOO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
379 380parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
185 189parallel
Strand 6
A
129 137parallel
Strand 7
A
154 159parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
167 168anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
387 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il