Analysis of interatomic Contacts of Structural Units in PDB entry:
1YP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YP0 entry

There are 2 chains in PDB entry 1YP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 223GLN 461
B
 HIS 17GLY 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1YP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
225 235Right-handed alpha
Helix 2
2
A
237 249Right-handed alpha
Helix 3
3
A
262 284Right-handed alpha
Helix 4
4
A
286 290Right-handed 310
Helix 5
5
A
291 319Right-handed alpha
Helix 6
6
A
334 341Right-handed alpha
Helix 7
7
A
342 362Right-handed alpha
Helix 8
8
A
365 378Right-handed alpha
Helix 9
9
A
381 385Right-handed 310
Helix 10
10
A
387 410Right-handed alpha
Helix 11
11
A
415 444Right-handed alpha
Helix 12
12
A
451 459Right-handed alpha
Helix 13
13
B
19 26Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1YP0.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
331 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il