Analysis of interatomic Contacts of Structural Units in PDB entry:
1YQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YQ6 entry

There are 3 chains in PDB entry 1YQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 197ASN 340
B
 GLY 197ASN 340
C
 GLY 197ASN 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1YQ6

There are 6 sheets in PDB entry 1YQ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 236first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
331 338anti-parallel
Strand 4
A
255 264anti-parallel
Strand 5
A
296 305anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
247 249anti-parallel
Strand 3
A
315 322anti-parallel
Strand 4
A
272 279anti-parallel
Strand 5
A
282 289anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 236first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
331 338anti-parallel
Strand 4
B
255 264anti-parallel
Strand 5
B
296 305anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
247 249anti-parallel
Strand 3
B
315 322anti-parallel
Strand 4
B
272 279anti-parallel
Strand 5
B
282 289anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 236first strand
Strand 2
C
201 207anti-parallel
Strand 3
C
331 338anti-parallel
Strand 4
C
255 264anti-parallel
Strand 5
C
296 305anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 242first strand
Strand 2
C
247 249anti-parallel
Strand 3
C
315 322anti-parallel
Strand 4
C
272 279anti-parallel
Strand 5
C
282 289anti-parallel
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