Analysis of interatomic Contacts of Structural Units in PDB entry:
1YQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YQY entry

There is 1 chain in PDB entry 1YQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 265VAL 778
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 1YQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
266 285Right-handed alpha
Helix 2
2
A
286 298Right-handed alpha
Helix 3
3
A
303 311Right-handed alpha
Helix 4
4
A
312 322Right-handed alpha
Helix 5
5
A
323 327Right-handed 310
Helix 6
6
A
331 347Right-handed alpha
Helix 7
7
A
350 357Right-handed alpha
Helix 8
8
A
369 383Right-handed alpha
Helix 9
9
A
387 396Right-handed alpha
Helix 10
10
A
405 423Right-handed alpha
Helix 11
11
A
431 435Right-handed 310
Helix 12
12
A
442 446Right-handed 310
Helix 13
13
A
447 452Right-handed alpha
Helix 14
14
A
464 474Right-handed alpha
Helix 15
15
A
551 574Right-handed alpha
Helix 16
16
A
591 610Right-handed alpha
Helix 17
17
A
611 625Right-handed alpha
Helix 18
18
A
635 638Right-handed 310
Helix 19
19
A
639 644Right-handed alpha
Helix 20
20
A
648 652Right-handed 310
Helix 21
21
A
661 664Right-handed 310
Helix 22
22
A
679 701Right-handed alpha
Helix 23
23
A
707 710Right-handed 310
Helix 24
24
A
711 722Right-handed alpha
Helix 25
25
A
727 731Right-handed 310
Helix 26
26
A
732 744Right-handed alpha
Helix 27
27
A
748 759Right-handed alpha
Helix 28
28
A
759 776Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1YQY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
499 504anti-parallel
Strand 3
A
540 550parallel
Strand 4
A
525 537anti-parallel
Strand 5
A
477 480anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
511 514anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
629 632parallel
Strand 3
A
665 669parallel
Strand 4
A
657 660anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il