Analysis of interatomic Contacts of Structural Units in PDB entry:
1YR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YR8 entry

There is 1 chain in PDB entry 1YR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 499CYS 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1YR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
55 61Right-handed alpha
Helix 3
3
A
65 78Right-handed alpha
Helix 4
4
A
80 93Right-handed alpha
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
112 120Right-handed alpha
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
138 157Right-handed alpha
Helix 9
9
A
166 170Right-handed 310
Helix 10
10
A
171 184Right-handed alpha
Helix 11
11
A
184 189Right-handed alpha
Helix 12
12
A
197 210Right-handed alpha
Helix 13
13
A
229 243Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1YR8.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
30 34parallel
Strand 3
A
97 101parallel
Strand 4
A
2 7parallel
Strand 5
A
126 131parallel
Strand 6
A
160 164parallel
Strand 7
A
220 221parallel
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