Analysis of interatomic Contacts of Structural Units in PDB entry:
1YRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YRW entry

There is 1 chain in PDB entry 1YRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1YRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 22Right-handed alpha
Helix 2
2
A
44 53Right-handed alpha
Helix 3
3
A
64 75Right-handed alpha
Helix 4
4
A
89 94Right-handed alpha
Helix 5
5
A
115 123Right-handed alpha
Helix 6
6
A
157 182Right-handed alpha
Helix 7
7
A
191 195Right-handed 310
Helix 8
8
A
202 207Right-handed 310
Helix 9
9
A
213 224Right-handed alpha
Helix 10
10
A
289 296Right-handed alpha
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There are 4 sheets in PDB entry 1YRW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
25 30parallel
Strand 3
A
2 7parallel
Strand 4
A
78 82parallel
Strand 5
A
100 104parallel
Strand 6
A
127 134anti-parallel
Strand 7
A
144 151anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
197 198parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
238 248anti-parallel
Strand 3
A
273 281anti-parallel
Strand 4
A
265 268anti-parallel
Strand 5
A
259 261anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
238 248anti-parallel
Strand 3
A
273 281anti-parallel
Strand 4
A
287 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il