Analysis of interatomic Contacts of Structural Units in PDB entry:
1YRZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1YRZ entry

There are 2 chains in PDB entry 1YRZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1004	GLU 1525
B	ARG 2004	GLU 2525

There are 2 helices in PDB entry 1YRZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1485	1487	Right-handed 310
Helix 2	2	B	2485	2487	Right-handed 310

There are 24 sheets in PDB entry 1YRZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1005	1006	first strand
Strand 2	A	1307	1308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1018	1022	first strand
Strand 2	A	1025	1030	anti-parallel
Strand 3	A	1040	1044	anti-parallel
Strand 4	A	1051	1054	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1036	first strand
Strand 2	A	1337	1339	anti-parallel
Strand 3	A	1372	1377	anti-parallel
Strand 4	A	1501	1508	anti-parallel
Strand 5	A	1398	1407	anti-parallel
Strand 6	A	1410	1419	anti-parallel
Strand 7	A	1423	1432	anti-parallel
Strand 8	A	1435	1438	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1036	first strand
Strand 2	A	1337	1339	anti-parallel
Strand 3	A	1372	1377	anti-parallel
Strand 4	A	1501	1508	anti-parallel
Strand 5	A	1398	1407	anti-parallel
Strand 6	A	1410	1419	anti-parallel
Strand 7	A	1423	1432	anti-parallel
Strand 8	A	1444	1445	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1073	1074	first strand
Strand 2	A	1085	1095	anti-parallel
Strand 3	A	1078	1082	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1073	1074	first strand
Strand 2	A	1085	1095	anti-parallel
Strand 3	A	1102	1110	anti-parallel
Strand 4	A	1121	1122	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1134	first strand
Strand 2	A	1140	1147	anti-parallel
Strand 3	A	1156	1165	anti-parallel
Strand 4	A	1170	1179	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1188	1195	first strand
Strand 2	A	1198	1205	anti-parallel
Strand 3	A	1213	1219	anti-parallel
Strand 4	A	1227	1228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1188	1195	first strand
Strand 2	A	1198	1205	anti-parallel
Strand 3	A	1213	1219	anti-parallel
Strand 4	A	1235	1236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1246	1255	first strand
Strand 2	A	1261	1268	anti-parallel
Strand 3	A	1281	1289	anti-parallel
Strand 4	A	1295	1297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1324	1325	first strand
Strand 2	A	1515	1524	anti-parallel
Strand 3	A	1357	1360	anti-parallel
Strand 4	A	1348	1349	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1324	1325	first strand
Strand 2	A	1515	1524	anti-parallel
Strand 3	A	1382	1390	anti-parallel
Strand 4	A	1452	1459	anti-parallel
Strand 5	A	1462	1469	anti-parallel
Strand 6	A	1476	1483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2005	2006	first strand
Strand 2	B	2307	2308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2018	2022	first strand
Strand 2	B	2025	2030	anti-parallel
Strand 3	B	2040	2044	anti-parallel
Strand 4	B	2051	2054	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2035	2036	first strand
Strand 2	B	2337	2339	anti-parallel
Strand 3	B	2372	2377	anti-parallel
Strand 4	B	2501	2508	anti-parallel
Strand 5	B	2398	2407	anti-parallel
Strand 6	B	2410	2419	anti-parallel
Strand 7	B	2423	2432	anti-parallel
Strand 8	B	2435	2438	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2035	2036	first strand
Strand 2	B	2337	2339	anti-parallel
Strand 3	B	2372	2377	anti-parallel
Strand 4	B	2501	2508	anti-parallel
Strand 5	B	2398	2407	anti-parallel
Strand 6	B	2410	2419	anti-parallel
Strand 7	B	2423	2432	anti-parallel
Strand 8	B	2444	2445	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2073	2074	first strand
Strand 2	B	2085	2095	anti-parallel
Strand 3	B	2078	2082	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2073	2074	first strand
Strand 2	B	2085	2095	anti-parallel
Strand 3	B	2102	2110	anti-parallel
Strand 4	B	2121	2122	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2131	2134	first strand
Strand 2	B	2140	2147	anti-parallel
Strand 3	B	2156	2165	anti-parallel
Strand 4	B	2170	2179	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2188	2195	first strand
Strand 2	B	2198	2205	anti-parallel
Strand 3	B	2213	2219	anti-parallel
Strand 4	B	2227	2228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2188	2195	first strand
Strand 2	B	2198	2205	anti-parallel
Strand 3	B	2213	2219	anti-parallel
Strand 4	B	2235	2236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2246	2255	first strand
Strand 2	B	2261	2268	anti-parallel
Strand 3	B	2281	2289	anti-parallel
Strand 4	B	2295	2297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2324	2325	first strand
Strand 2	B	2515	2524	anti-parallel
Strand 3	B	2357	2360	anti-parallel
Strand 4	B	2348	2349	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2324	2325	first strand
Strand 2	B	2515	2524	anti-parallel
Strand 3	B	2382	2390	anti-parallel
Strand 4	B	2452	2459	anti-parallel
Strand 5	B	2462	2469	anti-parallel
Strand 6	B	2476	2483	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1YRZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1YRZ