Analysis of interatomic Contacts of Structural Units in PDB entry:
1YT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YT8 entry

There is 1 chain in PDB entry 1YT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6GLU 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1YT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
47 49Right-handed 310
Helix 4
4
A
50 59Right-handed alpha
Helix 5
5
A
74 86Right-handed alpha
Helix 6
6
A
96 104Right-handed alpha
Helix 7
7
A
113 128Right-handed alpha
Helix 8
8
A
133 143Right-handed alpha
Helix 9
9
A
154 161Right-handed alpha
Helix 10
10
A
170 172Right-handed 310
Helix 11
11
A
173 182Right-handed alpha
Helix 12
12
A
196 209Right-handed alpha
Helix 13
13
A
220 228Right-handed alpha
Helix 14
14
A
244 263Right-handed alpha
Helix 15
15
A
268 278Right-handed alpha
Helix 16
16
A
290 297Right-handed alpha
Helix 17
17
A
306 313Right-handed alpha
Helix 18
18
A
313 318Right-handed alpha
Helix 19
19
A
333 345Right-handed alpha
Helix 20
20
A
356 360Right-handed 310
Helix 21
21
A
380 388Right-handed alpha
Helix 22
22
A
400 407Right-handed alpha
Helix 23
23
A
416 418Right-handed 310
Helix 24
24
A
419 428Right-handed alpha
Helix 25
25
A
440 455Right-handed alpha
Helix 26
26
A
463 471Right-handed alpha
Helix 27
27
A
500 513Right-handed alpha
Helix 28
28
A
513 522Right-handed alpha
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There are 4 sheets in PDB entry 1YT8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
91 94parallel
Strand 3
A
66 69parallel
Strand 4
A
25 28parallel
Strand 5
A
44 45parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
215 218parallel
Strand 3
A
188 192parallel
Strand 4
A
147 151parallel
Strand 5
A
167 168parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
348 352parallel
Strand 3
A
324 328parallel
Strand 4
A
283 287parallel
Strand 5
A
303 304parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
458 461parallel
Strand 3
A
432 436parallel
Strand 4
A
393 397parallel
Strand 5
A
413 414parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il