Analysis of interatomic Contacts of Structural Units in PDB entry:
1YTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YTM entry

There are 2 chains in PDB entry 1YTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 518
B
 SER 1002PHE 1518
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1YTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
23 32Right-handed alpha
Helix 3
3
A
37 40Right-handed 310
Helix 4
4
A
61 63Right-handed 310
Helix 5
5
A
70 74Right-handed 310
Helix 6
6
A
91 107Right-handed alpha
Helix 7
7
A
134 145Right-handed alpha
Helix 8
8
A
149 154Right-handed alpha
Helix 9
9
A
202 216Right-handed alpha
Helix 10
10
A
217 220Right-handed 310
Helix 11
11
A
247 253Right-handed alpha
Helix 12
12
A
291 298Right-handed alpha
Helix 13
13
A
333 335Right-handed 310
Helix 14
14
A
369 380Right-handed alpha
Helix 15
15
A
401 408Right-handed 310
Helix 16
16
A
411 427Right-handed alpha
Helix 17
17
A
445 458Right-handed alpha
Helix 18
18
A
459 464Right-handed 310
Helix 19
19
A
485 494Right-handed 310
Helix 20
20
A
496 516Right-handed alpha
Helix 21
21
B
1002 1007Right-handed alpha
Helix 22
22
B
1008 1011Right-handed 310
Helix 23
23
B
1023 1032Right-handed alpha
Helix 24
24
B
1037 1041Right-handed 310
Helix 25
25
B
1061 1063Right-handed 310
Helix 26
26
B
1070 1074Right-handed 310
Helix 27
27
B
1091 1106Right-handed alpha
Helix 28
28
B
1134 1145Right-handed alpha
Helix 29
29
B
1202 1216Right-handed alpha
Helix 30
30
B
1217 1220Right-handed 310
Helix 31
31
B
1247 1253Right-handed alpha
Helix 32
32
B
1291 1298Right-handed alpha
Helix 33
33
B
1333 1335Right-handed 310
Helix 34
34
B
1369 1380Right-handed alpha
Helix 35
35
B
1401 1408Right-handed 310
Helix 36
36
B
1411 1427Right-handed alpha
Helix 37
37
B
1445 1458Right-handed alpha
Helix 38
38
B
1459 1464Right-handed alpha
Helix 39
39
B
1485 1489Right-handed 310
Helix 40
40
B
1496 1515Right-handed alpha
Helix 41
41
B
1516 1518Right-handed 310
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There are 14 sheets in PDB entry 1YTM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
110 118parallel
Strand 3
A
126 132anti-parallel
Strand 4
A
160 165parallel
Strand 5
A
192 196parallel
Strand 6
A
183 187anti-parallel
Strand 7
A
65 68parallel
Strand 8
A
88 90parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
50 52anti-parallel
Strand 3
A
303 305parallel
Strand 4
A
327 331anti-parallel
Strand 5
A
278 282anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
222 231anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
272 274anti-parallel
Strand 5
A
344 345anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
222 231anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
348 355parallel
Strand 5
A
429 434parallel
Strand 6
A
365 367anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
315 316anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 384first strand
Strand 2
A
396 399anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
474 477anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1017 1020first strand
Strand 2
B
1110 1118parallel
Strand 3
B
1126 1132anti-parallel
Strand 4
B
1160 1165parallel
Strand 5
B
1192 1196parallel
Strand 6
B
1183 1187anti-parallel
Strand 7
B
1065 1068parallel
Strand 8
B
1088 1090parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1043 1044first strand
Strand 2
B
1050 1052anti-parallel
Strand 3
B
1303 1305parallel
Strand 4
B
1327 1331anti-parallel
Strand 5
B
1278 1282anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1258 1261first strand
Strand 2
B
1222 1230anti-parallel
Strand 3
B
1264 1267anti-parallel
Strand 4
B
1272 1274anti-parallel
Strand 5
B
1344 1345anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1258 1261first strand
Strand 2
B
1222 1230anti-parallel
Strand 3
B
1237 1241anti-parallel
Strand 4
B
1348 1355parallel
Strand 5
B
1429 1434parallel
Strand 6
B
1365 1367anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1308 1309first strand
Strand 2
B
1315 1316anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1381 1384first strand
Strand 2
B
1396 1399anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1466 1469first strand
Strand 2
B
1474 1477anti-parallel
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