Analysis of interatomic Contacts of Structural Units in PDB entry:
1YUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YUC entry

There are 4 chains in PDB entry 1YUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 299ALA 538
B
 SER 300LYS 539
C
 ALA 15SER 28
D
 ARG 17SER 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1YUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
302 310Right-handed alpha
Helix 2
2
A
314 333Right-handed alpha
Helix 3
3
A
340 363Right-handed alpha
Helix 4
4
A
365 369Right-handed 310
Helix 5
5
A
370 397Right-handed alpha
Helix 6
6
A
413 420Right-handed alpha
Helix 7
7
A
421 442Right-handed alpha
Helix 8
8
A
444 457Right-handed alpha
Helix 9
9
A
466 489Right-handed alpha
Helix 10
10
A
494 501Right-handed alpha
Helix 11
11
A
501 523Right-handed alpha
Helix 12
12
A
530 538Right-handed alpha
Helix 13
13
B
302 310Right-handed alpha
Helix 14
14
B
314 332Right-handed alpha
Helix 15
15
B
340 362Right-handed alpha
Helix 16
16
B
363 368Right-handed alpha
Helix 17
17
B
370 397Right-handed alpha
Helix 18
18
B
413 420Right-handed alpha
Helix 19
19
B
421 441Right-handed alpha
Helix 20
20
B
444 457Right-handed alpha
Helix 21
21
B
466 489Right-handed alpha
Helix 22
22
B
494 501Right-handed alpha
Helix 23
23
B
502 523Right-handed alpha
Helix 24
24
B
530 537Right-handed alpha
Helix 25
25
C
18 27Right-handed alpha
Helix 26
26
D
18 27Right-handed alpha
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There are 2 sheets in PDB entry 1YUC. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
410 412anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 404first strand
Strand 2
B
410 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il