Analysis of interatomic Contacts of Structural Units in PDB entry:
1YVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YVB entry

There are 2 chains in PDB entry 1YVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 0GLU 212
I
 ARG 6GLN 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1YVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 0Right-handed alpha
Helix 2
2
A
8 10Right-handed 310
Helix 3
3
A
24 42Right-handed alpha
Helix 4
4
A
49 57Right-handed alpha
Helix 5
5
A
61 65Right-handed 310
Helix 6
6
A
67 79Right-handed alpha
Helix 7
7
A
117 125Right-handed alpha
Helix 8
8
A
137 143Right-handed alpha
Helix 9
9
A
198 202Right-handed 310
Helix 10
10
I
18 36Right-handed alpha
Helix 11
11
I
103 106Right-handed 310
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There are 4 sheets in PDB entry 1YVB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
206 210anti-parallel
Strand 5
A
108 111anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
169 174anti-parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
148 149parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 12first strand
Strand 2
I
51 54anti-parallel
Strand 3
I
58 68anti-parallel
Strand 4
I
42 47anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 12first strand
Strand 2
I
51 54anti-parallel
Strand 3
I
58 68anti-parallel
Strand 4
I
93 102anti-parallel
Strand 5
I
107 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il