Analysis of interatomic Contacts of Structural Units in PDB entry:
1YVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YVG entry

There is 1 chain in PDB entry 1YVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ASP 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1YVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
79 99Right-handed alpha
Helix 3
3
A
100 113Right-handed alpha
Helix 4
4
A
225 242Right-handed alpha
Helix 5
5
A
267 275Right-handed alpha
Helix 6
6
A
276 282Right-handed 310
Helix 7
7
A
283 306Right-handed alpha
Helix 8
8
A
317 329Right-handed alpha
Helix 9
9
A
342 355Right-handed alpha
Helix 10
10
A
358 366Right-handed alpha
Helix 11
11
A
401 405Right-handed 310
Helix 12
12
A
407 414Right-handed 310
Helix 13
13
A
418 422Right-handed 310
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There are 5 sheets in PDB entry 1YVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 153first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
18 22anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 48anti-parallel
Strand 6
A
156 160parallel
Strand 7
A
193 196parallel
Strand 8
A
169 172anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
310 311parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
181 182anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
201 205anti-parallel
Strand 3
A
379 383anti-parallel
Strand 4
A
423 424anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
339 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il