Analysis of interatomic Contacts of Structural Units in PDB entry:
1YVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YVN entry

There are 2 chains in PDB entry 1YVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4PHE 375
G
 MET 1PHE 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1YVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed alpha
Helix 2
2
A
79 91Right-handed alpha
Helix 3
3
A
98 100Right-handed 310
Helix 4
4
A
113 125Right-handed alpha
Helix 5
5
A
137 145Right-handed alpha
Helix 6
6
A
172 174Right-handed 310
Helix 7
7
A
182 195Right-handed alpha
Helix 8
8
A
203 216Right-handed alpha
Helix 9
9
A
223 231Right-handed alpha
Helix 10
10
A
252 261Right-handed 310
Helix 11
11
A
264 267Right-handed 310
Helix 12
12
A
274 284Right-handed alpha
Helix 13
13
A
287 295Right-handed alpha
Helix 14
14
A
302 304Right-handed 310
Helix 15
15
A
309 320Right-handed alpha
Helix 16
16
A
338 348Right-handed alpha
Helix 17
17
A
350 354Right-handed 310
Helix 18
18
A
359 365Right-handed alpha
Helix 19
19
A
367 373Right-handed 310
Helix 20
20
G
6 10Right-handed alpha
Helix 21
21
G
32 34Right-handed 310
Helix 22
22
G
71 87Right-handed alpha
Helix 23
23
G
104 109Right-handed alpha
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There are 6 sheets in PDB entry 1YVN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
103 107parallel
Strand 3
A
8 12parallel
Strand 4
A
16 21anti-parallel
Strand 5
A
29 32anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
65 68anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
150 155parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
176 178anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
26 29first strand
Strand 2
G
16 23anti-parallel
Strand 3
G
43 51anti-parallel
Strand 4
G
57 65anti-parallel
Strand 5
G
92 98parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
37 39first strand
Strand 2
G
115 117parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il