Analysis of interatomic Contacts of Structural Units in PDB entry:
1YVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YVR entry

There is 1 chain in PDB entry 1YVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 5LEU 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 1YVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 40Right-handed alpha
Helix 2
2
A
49 67Right-handed alpha
Helix 3
3
A
69 84Right-handed alpha
Helix 4
4
A
89 101Right-handed alpha
Helix 5
5
A
104 119Right-handed alpha
Helix 6
6
A
121 135Right-handed alpha
Helix 7
7
A
145 158Right-handed alpha
Helix 8
8
A
160 169Right-handed alpha
Helix 9
9
A
178 186Right-handed alpha
Helix 10
10
A
192 204Right-handed alpha
Helix 11
11
A
205 213Right-handed alpha
Helix 12
12
A
219 237Right-handed alpha
Helix 13
13
A
240 252Right-handed alpha
Helix 14
14
A
254 258Right-handed 310
Helix 15
15
A
261 264Right-handed 310
Helix 16
16
A
265 275Right-handed alpha
Helix 17
17
A
277 291Right-handed alpha
Helix 18
18
A
298 309Right-handed alpha
Helix 19
19
A
310 317Right-handed alpha
Helix 20
20
A
320 334Right-handed alpha
Helix 21
21
A
346 360Right-handed alpha
Helix 22
22
A
378 383Right-handed 310
Helix 23
23
A
391 407Right-handed alpha
Helix 24
24
A
429 438Right-handed alpha
Helix 25
25
A
448 457Right-handed alpha
Helix 26
26
A
478 491Right-handed alpha
Helix 27
27
A
525 535Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1YVR. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
506 507anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
410 415anti-parallel
Strand 3
A
371 376parallel
Strand 4
A
463 468parallel
Strand 5
A
495 500parallel
Strand 6
A
516 520parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il