Analysis of interatomic Contacts of Structural Units in PDB entry:
1YVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YVU entry

There is 1 chain in PDB entry 1YVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1YVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 47Right-handed alpha
Helix 2
2
A
93 108Right-handed alpha
Helix 3
3
A
109 126Right-handed alpha
Helix 4
4
A
168 176Right-handed alpha
Helix 5
5
A
206 216Right-handed alpha
Helix 6
6
A
219 232Right-handed alpha
Helix 7
7
A
232 239Right-handed alpha
Helix 8
8
A
268 273Right-handed alpha
Helix 9
9
A
279 300Right-handed alpha
Helix 10
10
A
336 343Right-handed alpha
Helix 11
11
A
367 382Right-handed alpha
Helix 12
12
A
401 412Right-handed alpha
Helix 13
13
A
436 449Right-handed alpha
Helix 14
14
A
458 464Right-handed alpha
Helix 15
15
A
465 481Right-handed alpha
Helix 16
16
A
541 558Right-handed alpha
Helix 17
17
A
575 590Right-handed alpha
Helix 18
18
A
651 662Right-handed alpha
Helix 19
19
A
663 667Right-handed 310
Helix 20
20
A
681 691Right-handed alpha
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There are 10 sheets in PDB entry 1YVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
6 7anti-parallel
Strand 3
A
606 607anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
134 147anti-parallel
Strand 3
A
153 165anti-parallel
Strand 4
A
9 14anti-parallel
Strand 5
A
303 305anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
86 87anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
69 72anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
56 59anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
194 201anti-parallel
Strand 4
A
184 187anti-parallel
Strand 5
A
255 257anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
616 619anti-parallel
Strand 3
A
624 627anti-parallel
Strand 4
A
641 647anti-parallel
Strand 5
A
592 599anti-parallel
Strand 6
A
565 570parallel
Strand 7
A
497 501parallel
Strand 8
A
515 522anti-parallel
Strand 9
A
503 505anti-parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
616 619anti-parallel
Strand 3
A
624 627anti-parallel
Strand 4
A
641 647anti-parallel
Strand 5
A
592 599anti-parallel
Strand 6
A
565 570parallel
Strand 7
A
497 501parallel
Strand 8
A
515 522anti-parallel
Strand 9
A
528 536anti-parallel
Strand 10
A
697 700anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
322 323anti-parallel
Strand 3
A
487 488anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 396first strand
Strand 2
A
351 360parallel
Strand 3
A
419 424parallel
Strand 4
A
454 457parallel
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