Analysis of interatomic Contacts of Structural Units in PDB entry:
1YW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YW6 entry

There are 2 chains in PDB entry 1YW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2SER 322
B
 MSE 1SER 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1YW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 11Right-handed alpha
Helix 2
2
A
57 72Right-handed alpha
Helix 3
3
A
87 92Right-handed alpha
Helix 4
4
A
116 135Right-handed alpha
Helix 5
5
A
169 179Right-handed alpha
Helix 6
6
A
193 202Right-handed alpha
Helix 7
7
A
224 237Right-handed alpha
Helix 8
8
B
1 11Right-handed alpha
Helix 9
9
B
56 73Right-handed alpha
Helix 10
10
B
87 93Right-handed alpha
Helix 11
11
B
101 105Right-handed 310
Helix 12
12
B
108 113Right-handed 310
Helix 13
13
B
117 133Right-handed alpha
Helix 14
14
B
169 179Right-handed alpha
Helix 15
15
B
193 202Right-handed alpha
Helix 16
16
B
225 237Right-handed alpha
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There are 4 sheets in PDB entry 1YW6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
24 30anti-parallel
Strand 3
A
33 38anti-parallel
Strand 4
A
80 84anti-parallel
Strand 5
A
45 50parallel
Strand 6
A
141 147parallel
Strand 7
A
205 210parallel
Strand 8
A
158 161anti-parallel
Strand 9
A
183 186parallel
Strand 10
A
249 255parallel
Strand 11
A
316 321anti-parallel
Strand 12
A
298 302anti-parallel
Strand 13
A
277 279anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
285 286anti-parallel
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There are 13 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
24 30anti-parallel
Strand 3
B
33 38anti-parallel
Strand 4
B
81 84anti-parallel
Strand 5
B
46 50parallel
Strand 6
B
142 147parallel
Strand 7
B
205 210parallel
Strand 8
B
158 161anti-parallel
Strand 9
B
183 186parallel
Strand 10
B
249 253parallel
Strand 11
B
316 320anti-parallel
Strand 12
B
298 302anti-parallel
Strand 13
B
276 279anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
283 287anti-parallel
Strand 3
B
290 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il