Analysis of interatomic Contacts of Structural Units in PDB entry:
1YXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YXI entry

There is 1 chain in PDB entry 1YXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ALA 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1YXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 19Right-handed alpha
Helix 2
2
A
28 49Right-handed alpha
Helix 3
3
A
72 88Right-handed alpha
Helix 4
4
A
106 108Right-handed 310
Helix 5
5
A
122 126Right-handed 310
Helix 6
6
A
148 153Right-handed 310
Helix 7
7
A
155 157Right-handed 310
Helix 8
8
A
212 219Right-handed 310
Helix 9
9
A
220 232Right-handed alpha
Helix 10
10
A
247 259Right-handed alpha
Helix 11
11
A
280 291Right-handed alpha
Helix 12
12
A
301 305Right-handed 310
Helix 13
13
A
320 335Right-handed alpha
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There are 3 sheets in PDB entry 1YXI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
69 71anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
110 121parallel
Strand 4
A
132 140anti-parallel
Strand 5
A
159 167anti-parallel
Strand 6
A
171 177anti-parallel
Strand 7
A
180 187anti-parallel
Strand 8
A
192 197anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
208 210parallel
Strand 3
A
261 264parallel
Strand 4
A
316 319anti-parallel
Strand 5
A
294 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il