Analysis of interatomic Contacts of Structural Units in PDB entry:
1YXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YXW entry

There is 1 chain in PDB entry 1YXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 875ASP 1315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1YXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
876 884Right-handed alpha
Helix 2
2
A
962 970Right-handed alpha
Helix 3
3
A
1097 1108Right-handed alpha
Helix 4
4
A
1134 1136Right-handed 310
Helix 5
5
A
1219 1221Right-handed 310
Helix 6
6
A
1288 1293Right-handed 310
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There are 7 sheets in PDB entry 1YXW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
885 892anti-parallel
Strand 3
A
1083 1092anti-parallel
Strand 4
A
920 926anti-parallel
Strand 5
A
913 917anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
885 892anti-parallel
Strand 3
A
1083 1092anti-parallel
Strand 4
A
950 957anti-parallel
Strand 5
A
1032 1038anti-parallel
Strand 6
A
1043 1048anti-parallel
Strand 7
A
1051 1057anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 908first strand
Strand 2
A
933 936anti-parallel
Strand 3
A
1069 1075anti-parallel
Strand 4
A
974 978anti-parallel
Strand 5
A
991 996anti-parallel
Strand 6
A
999 1005anti-parallel
Strand 7
A
1011 1017anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1217 1218first strand
Strand 2
A
1222 1224anti-parallel
Strand 3
A
1281 1287anti-parallel
Strand 4
A
1264 1273anti-parallel
Strand 5
A
1254 1258anti-parallel
Strand 6
A
1239 1243anti-parallel
Strand 7
A
1194 1201anti-parallel
Strand 8
A
1206 1212anti-parallel
Strand 9
A
1236 1237anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1227first strand
Strand 2
A
1206 1212anti-parallel
Strand 3
A
1194 1201anti-parallel
Strand 4
A
1175 1179anti-parallel
Strand 5
A
1127 1132anti-parallel
Strand 6
A
1303 1306anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1142first strand
Strand 2
A
1149 1153anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1159first strand
Strand 2
A
1164 1167anti-parallel
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