Analysis of interatomic Contacts of Structural Units in PDB entry:
1YYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YYA entry

There are 2 chains in PDB entry 1YYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 250
B
 MET 1GLY 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1YYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
42 44Right-handed 310
Helix 3
3
A
45 54Right-handed alpha
Helix 4
4
A
78 85Right-handed alpha
Helix 5
5
A
94 101Right-handed alpha
Helix 6
6
A
104 118Right-handed alpha
Helix 7
7
A
129 135Right-handed alpha
Helix 8
8
A
137 150Right-handed alpha
Helix 9
9
A
157 160Right-handed 310
Helix 10
10
A
167 171Right-handed 310
Helix 11
11
A
178 198Right-handed alpha
Helix 12
12
A
198 203Right-handed alpha
Helix 13
13
A
217 223Right-handed alpha
Helix 14
14
A
233 237Right-handed 310
Helix 15
15
A
238 250Right-handed alpha
Helix 16
16
B
15 30Right-handed alpha
Helix 17
17
B
42 44Right-handed 310
Helix 18
18
B
45 54Right-handed alpha
Helix 19
19
B
78 85Right-handed alpha
Helix 20
20
B
94 101Right-handed alpha
Helix 21
21
B
104 118Right-handed alpha
Helix 22
22
B
129 135Right-handed alpha
Helix 23
23
B
137 150Right-handed alpha
Helix 24
24
B
157 160Right-handed 310
Helix 25
25
B
167 171Right-handed 310
Helix 26
26
B
178 198Right-handed alpha
Helix 27
27
B
198 203Right-handed alpha
Helix 28
28
B
217 223Right-handed alpha
Helix 29
29
B
233 237Right-handed 310
Helix 30
30
B
238 250Right-handed alpha
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There are 2 sheets in PDB entry 1YYA. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
36 40parallel
Strand 3
A
59 62parallel
Strand 4
A
89 92parallel
Strand 5
A
121 126parallel
Strand 6
A
162 165parallel
Strand 7
A
206 210parallel
Strand 8
A
229 232parallel
Strand 9
A
5 9parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
36 40parallel
Strand 3
B
58 62parallel
Strand 4
B
89 92parallel
Strand 5
B
121 126parallel
Strand 6
B
162 165parallel
Strand 7
B
206 210parallel
Strand 8
B
229 232parallel
Strand 9
B
5 9parallel
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