Analysis of interatomic Contacts of Structural Units in PDB entry:
1YZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YZ6 entry

There is 1 chain in PDB entry 1YZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5LYS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1YZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 46Right-handed 310
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
86 115Right-handed alpha
Helix 4
4
A
118 123Right-handed alpha
Helix 5
5
A
125 133Right-handed alpha
Helix 6
6
A
135 147Right-handed alpha
Helix 7
7
A
148 152Right-handed 310
Helix 8
8
A
159 171Right-handed alpha
Helix 9
9
A
190 207Right-handed alpha
Helix 10
10
A
232 254Right-handed alpha
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There are 2 sheets in PDB entry 1YZ6. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 23first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
77 81parallel
Strand 5
A
63 72anti-parallel
Strand 6
A
14 23anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
223 228anti-parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
257 259anti-parallel
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