Analysis of interatomic Contacts of Structural Units in PDB entry:
1YZP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YZP entry

There is 1 chain in PDB entry 1YZP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1YZP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
34 50Right-handed alpha
Helix 4
4
A
56 60Right-handed 310
Helix 5
5
A
65 70Right-handed alpha
Helix 6
6
A
73 81Right-handed 310
Helix 7
7
A
83 97Right-handed alpha
Helix 8
8
A
101 116Right-handed alpha
Helix 9
9
A
147 160Right-handed alpha
Helix 10
10
A
162 170Right-handed alpha
Helix 11
11
A
171 175Right-handed 310
Helix 12
12
A
199 206Right-handed alpha
Helix 13
13
A
240 248Right-handed alpha
Helix 14
14
A
251 257Right-handed alpha
Helix 15
15
A
261 277Right-handed alpha
Helix 16
16
A
282 286Right-handed 310
Helix 17
17
A
290 293Right-handed 310
Helix 18
18
A
311 315Right-handed 310
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There are 3 sheets in PDB entry 1YZP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
287 288anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
188 189anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
238 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il