Analysis of interatomic Contacts of Structural Units in PDB entry:
1YZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1YZY entry

There are 2 chains in PDB entry 1YZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1LEU 412
B
 LEU 1LEU 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1YZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 20Right-handed alpha
Helix 2
2
A
53 71Right-handed alpha
Helix 3
3
A
91 104Right-handed alpha
Helix 4
4
A
114 117Right-handed 310
Helix 5
5
A
134 141Right-handed 310
Helix 6
6
A
150 159Right-handed alpha
Helix 7
7
A
167 172Right-handed alpha
Helix 8
8
A
174 188Right-handed alpha
Helix 9
9
A
200 210Right-handed alpha
Helix 10
10
A
219 232Right-handed alpha
Helix 11
11
A
235 239Right-handed 310
Helix 12
12
A
255 266Right-handed alpha
Helix 13
13
A
275 282Right-handed alpha
Helix 14
14
A
284 295Right-handed alpha
Helix 15
15
A
310 319Right-handed alpha
Helix 16
16
A
322 345Right-handed alpha
Helix 17
17
A
353 365Right-handed alpha
Helix 18
18
A
402 410Right-handed alpha
Helix 19
19
B
7 21Right-handed alpha
Helix 20
20
B
53 71Right-handed alpha
Helix 21
21
B
91 104Right-handed alpha
Helix 22
22
B
114 117Right-handed 310
Helix 23
23
B
134 141Right-handed 310
Helix 24
24
B
150 159Right-handed alpha
Helix 25
25
B
167 172Right-handed alpha
Helix 26
26
B
174 188Right-handed alpha
Helix 27
27
B
200 210Right-handed alpha
Helix 28
28
B
220 232Right-handed alpha
Helix 29
29
B
255 267Right-handed alpha
Helix 30
30
B
275 282Right-handed alpha
Helix 31
31
B
284 296Right-handed alpha
Helix 32
32
B
310 322Right-handed alpha
Helix 33
33
B
324 345Right-handed alpha
Helix 34
34
B
353 365Right-handed alpha
Helix 35
35
B
402 409Right-handed alpha
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There are 6 sheets in PDB entry 1YZY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
76 79parallel
Strand 3
A
2 5parallel
Strand 4
A
42 46parallel
Strand 5
A
25 29parallel
Strand 6
A
368 376anti-parallel
Strand 7
A
379 384anti-parallel
Strand 8
A
390 394anti-parallel
Strand 9
A
348 352parallel
Strand 10
A
247 251parallel
Strand 11
A
304 306parallel
Strand 12
A
271 273parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
192 195parallel
Strand 3
A
163 166parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
131 132anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
76 79parallel
Strand 3
B
2 5parallel
Strand 4
B
42 46parallel
Strand 5
B
25 29parallel
Strand 6
B
368 376anti-parallel
Strand 7
B
379 384anti-parallel
Strand 8
B
390 394anti-parallel
Strand 9
B
346 352parallel
Strand 10
B
246 251parallel
Strand 11
B
304 306parallel
Strand 12
B
271 273parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
125 128anti-parallel
Strand 3
B
131 132anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 166first strand
Strand 2
B
190 195parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il