Analysis of interatomic Contacts of Structural Units in PDB entry:
1Z40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Z40 entry

There are 2 chains in PDB entry 1Z40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 108GLU 438
E
 ASN 108GLU 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1Z40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
110 115Right-handed alpha
Helix 2
2
A
118 123Right-handed alpha
Helix 3
3
A
195 202Right-handed alpha
Helix 4
4
A
212 223Right-handed alpha
Helix 5
5
A
282 285Right-handed 310
Helix 6
6
A
297 302Right-handed alpha
Helix 7
7
A
333 345Right-handed alpha
Helix 8
8
A
358 365Right-handed alpha
Helix 9
9
E
110 115Right-handed alpha
Helix 10
10
E
118 123Right-handed alpha
Helix 11
11
E
195 202Right-handed alpha
Helix 12
12
E
212 222Right-handed alpha
Helix 13
13
E
282 285Right-handed 310
Helix 14
14
E
297 302Right-handed alpha
Helix 15
15
E
333 345Right-handed alpha
Helix 16
16
E
358 366Right-handed alpha
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There are 10 sheets in PDB entry 1Z40. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
140 144anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
287 290anti-parallel
Strand 3
A
238 241anti-parallel
Strand 4
A
246 249anti-parallel
Strand 5
A
193 194anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 158first strand
Strand 2
A
276 280anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
307 316anti-parallel
Strand 3
A
418 429anti-parallel
Strand 4
A
399 403anti-parallel
Strand 5
A
408 412anti-parallel
Strand 6
A
327 330anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 137first strand
Strand 2
E
140 144anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
151 152first strand
Strand 2
E
287 290anti-parallel
Strand 3
E
238 241anti-parallel
Strand 4
E
246 249anti-parallel
Strand 5
E
193 194anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
154 158first strand
Strand 2
E
276 280anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
319 322first strand
Strand 2
E
306 316anti-parallel
Strand 3
E
418 429anti-parallel
Strand 4
E
399 403anti-parallel
Strand 5
E
408 412anti-parallel
Strand 6
E
327 330anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
319 322first strand
Strand 2
E
306 316anti-parallel
Strand 3
E
437 438parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
369 370first strand
Strand 2
E
373 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il